Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00018 ATGGATAAACCTGAAGAACTTGCCGGCTGGGAGACTTCGGAAAGCTCTGCAAATTTTACTGGGGCAGTGCCGGAAGGGACTGTCCTAAGATTTTGTGCTTATTTGATTGGGGTTTTTGTGGTGCAAACTATTTTTGCTATTTGGATGATGGGAAATCCTAATTCTGATCAGAAATTCAATTTAGAAAGTGTGGAGAAGATGAGTCGAAGAGAATTTCCAGTGAATAAAATTGGAAAGGTTTTGCATGGAAATTTCGACACCAAAACAAAAAATTTTGTCAGTATTGACGACGCTGTATTCCTTAAGAAAGTCGAAGAAATTAGAGCTATGGCTGGGGCAGTACGAGAGGCTGAGAAAAGGCAAGCATCAGATGAAGACATTGAAGGTGGAAATGCGATTTCAAGGCCTATATTAGGCATAAGGAAAGAGATTGATGCTAGATTGATTAAGTTGCAAAGGAGAAATACTTCTTCTGGGGAGAAGTTACCAGATTCCCATGTAAACTTTCTTGATAAGATTAGGGAAGATGCAGATGGGGTTGGTAAGGATGATTTAGATGTGGAAGAGAAGAGGGCAACATTGATGTTTAAGAAAAGACACAAATTCAGAAGTTCTTCAAGAGAGTTGAAAACGAGCCCAAAAGGATTTCAAGGCAAAGAGTCCAGTACTTCTAAGAGAAAGAAGAATGATTCGATTAGTATAGATCAAGCAGTGGCCAATGGGAACATCATTGATGATGGTTCAAAAAGATCGAAACAAGCAAACCATGGAGTTGCTAAAGCTCAAGATAGTGCTTCGGGGATTTTCGGAGAAGGAGATGGAACAAATCTGACGTTACAAGAATCACTATTTCAGAGTGATGATTATGCCAAAAAGTTGGATAAAAGACTGGAAAGGAGTTCAGAACCAAGTAATGGAATCATGAAAGGAAGCCCGAGAACTTCCAAAACATCTGCAAAGGCTGCTAAGCCAATTTTAAGTGGCAATGGAGCTGGAGATATATCAGCAGTTCCCATGGTTAGAGAAAAACGTTCAAGTATTGGAAATGATAGGCGGCTAAATCTTCCTTACGTCCTGTTTATTTTTATCTGCAGAAGTTCTGACCATGAAAGGCTTGGTGGACTTTTTACATTAAAAATCTCCTCTCTAGCTGAGGACAAGAAAAATGACTCTTATACGATTGGTTTTGAGGATTGTGGTGATGCCAATAACTTCTGTTATCTTTTGGAGTCCTTTTTTGAAGGTCTTGGTGATTTCAGTGCTGATATTGTCCCTTTATCAAGAAAAGAACTTCACGAGTCAGTAGAATCCAATACGTTGAAGATAGTTGTCGTGAAGAAAGGGCAGATTCAACTTTATGTTGGGCAGCCATTTGCTGATGTTGAGATGGCTTTGCAGGCTTTGGTTGAACAAGACAGAAGCAGTAGCTTTGACTCAAGATAG 1443 39.57 MDKPEELAGWETSESSANFTGAVPEGTVLRFCAYLIGVFVVQTIFAIWMMGNPNSDQKFNLESVEKMSRREFPVNKIGKVLHGNFDTKTKNFVSIDDAVFLKKVEEIRAMAGAVREAEKRQASDEDIEGGNAISRPILGIRKEIDARLIKLQRRNTSSGEKLPDSHVNFLDKIREDADGVGKDDLDVEEKRATLMFKKRHKFRSSSRELKTSPKGFQGKESSTSKRKKNDSISIDQAVANGNIIDDGSKRSKQANHGVAKAQDSASGIFGEGDGTNLTLQESLFQSDDYAKKLDKRLERSSEPSNGIMKGSPRTSKTSAKAAKPILSGNGAGDISAVPMVREKRSSIGNDRRLNLPYVLFIFICRSSDHERLGGLFTLKISSLAEDKKNDSYTIGFEDCGDANNFCYLLESFFEGLGDFSADIVPLSRKELHESVESNTLKIVVVKKGQIQLYVGQPFADVEMALQALVEQDRSSSFDSR 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1188421 1190708 - BLOR04037 Blo12g00018 67279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00018 480 PANTHER ABC SUBFAMILY C PROTEIN 14 472 - -
Blo12g00018 480 MobiDBLite consensus disorder prediction 198 267 - -
Blo12g00018 480 MobiDBLite consensus disorder prediction 304 321 - -
Blo12g00018 480 MobiDBLite consensus disorder prediction 295 321 - -
Blo12g00018 480 PANTHER EMBRYO DEFECTIVE 1703-RELATED 14 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00018 - - - bhj:120068224 302.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00325 Blo-Chr2:3307221 Blo12g00018 Blo-Chr12:1188421 9.06E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010430 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 4 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00018 Blo_Chr12 FPKM 7.835781 9.866692 9.94698 10.788893 11.665346 12.119856 11.164947 7.421404 8.08903 6.427465