Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00020 ATGCCTCAACCAAATGTGGTGTCCTGGACTTCGGTTATGGCAGGTTATAATGAGAAAGGTCAGCCAGAAACTTCCCTTTGGCTCTTTGACCAAATGGCCAAGTGTTCGGTTTCCCCAAATGACTTCACATTTGCTACTGTGATTAATGCTTGTTCCACTCTTTCTAACTCAAAAAATGGTCGAGAAATCCATGCCCAGATTGAGGTTATTGGTTTTGGAGAAAATCTTGTTGTGTCTTCTTCACTCATTAATATGTATGGAAAATGCAACGATGTTAATGCAGCTCGACTCGTTTTTAACTCAATGCCTTGCAAGAATGTTATTTCTTGGACTTCAATGATTTCTGCATATGCCCAGGATGGACAAGGCTACCTTGCTCTCCAACTTTTCCGAGAATTCATTCATTCAAAGCTTGAGTCTCCCAATCATTTCATGTTAGCTAGTGTGATTAGTGCTTGCGCAAGCCAAGGGATGTTATCTGCTGGGAAAGCTGCACATGGAAAGGTAATTCGTCGTAGCCATGATTTGAATGATGTAGTAGCAACTGCTTTGGTTGACATGTATGCAAAATGTGGGTGCATATATTATTCTGATAAACTGTTTAGGCGAATTATAAACCCTTCTGTGATATCTTACTCTTCGATTATTGTTAGTGCGGCAAAGTATGGACTTGGGAGAGTTGCCCTTGAACTCTTTGATGAAATGATAGATAAAGGACTTGAGCCTAACCATATTACCTTTGTCGGTGTCTTACACGCTTGCAGCCATTCAGGTCTGATTAGTGAAGGCCTTCAACACTTCACATCAATGTTTAAGAAACACGGATTAGTCCCCGAAATGAAGCATTATGTGTGCGTTGTCGATATGCTTGGTCGAATAGGCCGGATAGATGAGGCCTATAACCTTGCATCATCAATACTGCCGAATTCTGATGATGGGGCTTTGTTATGGGGGGCGCTTCTTTCTGCCAGTAGGCTTCATGGGAGGGTTGACATTGCAATCAAAGCTCATCGTCACCTAGTCGAAGCCAAGCAACAGGTGGCTGGTGCATATGTTACGTTGTCAAACGCATATGCATTGGGAGGAGATTTGGAGACTGCAAATAGAGTTCGAGTAGAAATGAAGAAAGCTGGAGTGCAAAAAGAACCAGGTAGTAGTTGGGTCGAGATAAAAGACTCGATCTACCTGTTTTACGCTGGAGATTTGTCGTCTTGTGCGCAAAGTGTGGAAATAGCGAGGCTTTTGGGGAAGTTGGAAGAGGAAATGAGGGAGAGAGGGTATGTGAGATCAAGTGTTGGGATGGTGTATGTTGATGTGGAGGAAGAGGCCAAGGAGGTGATTATTGGTTTGCACAGTGAAAGACTGGCATTAGGATTTGGTTTGATAAATACTCCAAAAGGAACTACAATCAGAATAATGAAGAATTTGAGAATGTGCTGGGACTGCCATCAGGCTTTCAAGTTGATCAGTGACATTGTGAAGAGAGATTTTGTTGTTAGAGATTTGAATAGATTCCATCATTTTAAAGATGGTTCTTGCACTTGCAAAGATTTTTGGTGA 1560 42.05 MPQPNVVSWTSVMAGYNEKGQPETSLWLFDQMAKCSVSPNDFTFATVINACSTLSNSKNGREIHAQIEVIGFGENLVVSSSLINMYGKCNDVNAARLVFNSMPCKNVISWTSMISAYAQDGQGYLALQLFREFIHSKLESPNHFMLASVISACASQGMLSAGKAAHGKVIRRSHDLNDVVATALVDMYAKCGCIYYSDKLFRRIINPSVISYSSIIVSAAKYGLGRVALELFDEMIDKGLEPNHITFVGVLHACSHSGLISEGLQHFTSMFKKHGLVPEMKHYVCVVDMLGRIGRIDEAYNLASSILPNSDDGALLWGALLSASRLHGRVDIAIKAHRHLVEAKQQVAGAYVTLSNAYALGGDLETANRVRVEMKKAGVQKEPGSSWVEIKDSIYLFYAGDLSSCAQSVEIARLLGKLEEEMRERGYVRSSVGMVYVDVEEEAKEVIIGLHSERLALGFGLINTPKGTTIRIMKNLRMCWDCHQAFKLISDIVKRDFVVRDLNRFHHFKDGSCTCKDFW 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1248441 1250000 + BLOR04039 Blo12g00020 67281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00020 519 Pfam E motif 328 389 IPR046848 -
Blo12g00020 519 Pfam PPR repeat family 4 51 IPR002885 -
Blo12g00020 519 Pfam PPR repeat family 207 255 IPR002885 -
Blo12g00020 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 498 - -
Blo12g00020 519 Gene3D Tetratricopeptide repeat domain 75 170 IPR011990 GO:0005515
Blo12g00020 519 Pfam PPR repeat 80 106 IPR002885 -
Blo12g00020 519 Pfam PPR repeat 108 134 IPR002885 -
Blo12g00020 519 Gene3D Tetratricopeptide repeat domain 1 69 IPR011990 GO:0005515
Blo12g00020 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Blo12g00020 519 Gene3D Tetratricopeptide repeat domain 184 446 IPR011990 GO:0005515
Blo12g00020 519 Pfam DYW family of nucleic acid deaminases 430 519 IPR032867 GO:0008270
Blo12g00020 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Blo12g00020 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Blo12g00020 519 TIGRFAM PPR: pentatricopeptide repeat domain 210 243 IPR002885 -
Blo12g00020 519 TIGRFAM PPR: pentatricopeptide repeat domain 108 141 IPR002885 -
Blo12g00020 519 PANTHER OS12G0163600 PROTEIN 3 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00020 - - - jre:109005967 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00020 Blo-Chr12:1248441 Blo05g00612 Blo-Chr5:17006152 5.58E-135 dispersed
Blo12g00020 Blo-Chr12:1248441 Blo07g00268 Blo-Chr7:3202439 7.33E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29