Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g00022 | ATGGATCGCTGCGGTGGGATTACCAAAGGATCACCGTCCGATCTGTCCCTGGAATGGACAGCTAGGGCGACAGAGACGGAGCTCGACGAGCTGTACCCTGAACGGCCTCTCGAGGCTGATTGTATCTACTATTTGCGTACCGGATTTTGTGGCTATGGCTCCCGATGCCGGTTTAATCATCCTCGTGGACACAGTGCGGTTGGAGGATCTACAAGGCCTGGGGGAGTAGAGTACCCAGAGAGAATAGGCCAGCCTCTATGCCAGTATTTTATGAAGACTGGGATGTGTAAATTTGGTGCTACTTGTAAGTATCACCATCCAAAGCAGGGAGGAGGTACAGCCATTCCCCTGTCGTTGAATTATTATGGATACCCATTACAATCGGGCGAAAAAGAGTGTTCTCATTATGTTAAAACTGGGCAATGTAAATTTGGCGGGACTTGTAAATTCCATCATCCAGAATCGGTTGTTGTTCAACTTCCGAGACAATCCCCGGCTCCGAACATTGCCCCGATTCCCTCACCTAATGTGCATCCTTCTGTTCAATCCCCATCTCAACAGTATGGTGTTCTAGTTGCAAGGCCGTCTTTGCTACCAAGTTCATATGTTCATAGTGCTTATGGTCCTTTGCTTCTTTCTCCAAGGATAGTTCCTTTTTTTGGTTGGAGTCCCTATCTGGCTCAAATACACGCGGCAGCATCTCCTGGCACTCCATCTCCTGTTGCTGCAGGATCGCTTTATGGTATGACGCAATTTTCTCTTTCTGCCCCTGCGTATGCTGGATCATATCACACCATACCCTCTGCTGGACCTTCGAGCAGTAGTAGCCAAAAGGAACGCTTGTTTCCCGGAAGACCAGGCCAACCAGATTGCCAGTATTACATGAGAACAGGGGATTGTAAATTTGGGTCTTCGTGTAAATATCATCACCCTCCAGAACTGATTGCCCCGAGAGCAAATGTCGTCCTTGGCCCAAAGGGTCTTCCTCTTCGGCCGGTGAGCATCTAG | 1008 | 49.01 | MDRCGGITKGSPSDLSLEWTARATETELDELYPERPLEADCIYYLRTGFCGYGSRCRFNHPRGHSAVGGSTRPGGVEYPERIGQPLCQYFMKTGMCKFGATCKYHHPKQGGGTAIPLSLNYYGYPLQSGEKECSHYVKTGQCKFGGTCKFHHPESVVVQLPRQSPAPNIAPIPSPNVHPSVQSPSQQYGVLVARPSLLPSSYVHSAYGPLLLSPRIVPFFGWSPYLAQIHAAASPGTPSPVAAGSLYGMTQFSLSAPAYAGSYHTIPSAGPSSSSSQKERLFPGRPGQPDCQYYMRTGDCKFGSSCKYHHPPELIAPRANVVLGPKGLPLRPVSI | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1544529 | 1546406 | - | BLOR04041 | Blo12g00022 | 67283 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g00022 | 335 | Gene3D | - | 117 | 163 | - | - | |
Blo12g00022 | 335 | SUPERFAMILY | CCCH zinc finger | 130 | 155 | IPR036855 | GO:0046872 | |
Blo12g00022 | 335 | ProSiteProfiles | Zinc finger C3H1-type profile. | 81 | 109 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | SUPERFAMILY | CCCH zinc finger | 290 | 313 | IPR036855 | GO:0046872 | |
Blo12g00022 | 335 | ProSiteProfiles | Zinc finger C3H1-type profile. | 127 | 155 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | Gene3D | - | 264 | 321 | - | - | |
Blo12g00022 | 335 | SUPERFAMILY | CCCH zinc finger | 82 | 108 | IPR036855 | GO:0046872 | |
Blo12g00022 | 335 | ProSiteProfiles | Zinc finger C3H1-type profile. | 35 | 63 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | SUPERFAMILY | CCCH zinc finger | 40 | 63 | IPR036855 | GO:0046872 | |
Blo12g00022 | 335 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 84 | 108 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 287 | 312 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 39 | 62 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 129 | 154 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | PANTHER | PROTEIN PHOSPHATASE RELATED | 25 | 333 | - | - | |
Blo12g00022 | 335 | ProSiteProfiles | Zinc finger C3H1-type profile. | 285 | 313 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 25 | 333 | - | - | |
Blo12g00022 | 335 | Gene3D | - | 33 | 111 | - | - | |
Blo12g00022 | 335 | SMART | c3hfinal6 | 81 | 108 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | SMART | c3hfinal6 | 35 | 62 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | SMART | c3hfinal6 | 285 | 312 | IPR000571 | GO:0046872 | |
Blo12g00022 | 335 | SMART | c3hfinal6 | 127 | 154 | IPR000571 | GO:0046872 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo07g00181 | Blo12g00022 | CCT | |
Blo07g00181 | Blo12g00022 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo07g00181 | Blo-Chr7:2281253 | Blo12g00022 | Blo-Chr12:1544529 | 3.33E-124 | dispersed | |
Blo07g00555 | Blo-Chr7:15168773 | Blo12g00022 | Blo-Chr12:1544529 | 7.30E-15 | dispersed | |
Blo12g00022 | Blo-Chr12:1544529 | Blo10g00044 | Blo-Chr10:418056 | 7.49E-19 | dispersed | |
Blo12g00022 | Blo-Chr12:1544529 | Blo01g00086 | Blo-Chr1:1154513 | 6.33E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
12962 | PF00642 | zf-CCCH | 3.00E-10 | CL0537 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g00022 | - | - | peu:105121657 | 471.855 |