Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00022 ATGGATCGCTGCGGTGGGATTACCAAAGGATCACCGTCCGATCTGTCCCTGGAATGGACAGCTAGGGCGACAGAGACGGAGCTCGACGAGCTGTACCCTGAACGGCCTCTCGAGGCTGATTGTATCTACTATTTGCGTACCGGATTTTGTGGCTATGGCTCCCGATGCCGGTTTAATCATCCTCGTGGACACAGTGCGGTTGGAGGATCTACAAGGCCTGGGGGAGTAGAGTACCCAGAGAGAATAGGCCAGCCTCTATGCCAGTATTTTATGAAGACTGGGATGTGTAAATTTGGTGCTACTTGTAAGTATCACCATCCAAAGCAGGGAGGAGGTACAGCCATTCCCCTGTCGTTGAATTATTATGGATACCCATTACAATCGGGCGAAAAAGAGTGTTCTCATTATGTTAAAACTGGGCAATGTAAATTTGGCGGGACTTGTAAATTCCATCATCCAGAATCGGTTGTTGTTCAACTTCCGAGACAATCCCCGGCTCCGAACATTGCCCCGATTCCCTCACCTAATGTGCATCCTTCTGTTCAATCCCCATCTCAACAGTATGGTGTTCTAGTTGCAAGGCCGTCTTTGCTACCAAGTTCATATGTTCATAGTGCTTATGGTCCTTTGCTTCTTTCTCCAAGGATAGTTCCTTTTTTTGGTTGGAGTCCCTATCTGGCTCAAATACACGCGGCAGCATCTCCTGGCACTCCATCTCCTGTTGCTGCAGGATCGCTTTATGGTATGACGCAATTTTCTCTTTCTGCCCCTGCGTATGCTGGATCATATCACACCATACCCTCTGCTGGACCTTCGAGCAGTAGTAGCCAAAAGGAACGCTTGTTTCCCGGAAGACCAGGCCAACCAGATTGCCAGTATTACATGAGAACAGGGGATTGTAAATTTGGGTCTTCGTGTAAATATCATCACCCTCCAGAACTGATTGCCCCGAGAGCAAATGTCGTCCTTGGCCCAAAGGGTCTTCCTCTTCGGCCGGTGAGCATCTAG 1008 49.01 MDRCGGITKGSPSDLSLEWTARATETELDELYPERPLEADCIYYLRTGFCGYGSRCRFNHPRGHSAVGGSTRPGGVEYPERIGQPLCQYFMKTGMCKFGATCKYHHPKQGGGTAIPLSLNYYGYPLQSGEKECSHYVKTGQCKFGGTCKFHHPESVVVQLPRQSPAPNIAPIPSPNVHPSVQSPSQQYGVLVARPSLLPSSYVHSAYGPLLLSPRIVPFFGWSPYLAQIHAAASPGTPSPVAAGSLYGMTQFSLSAPAYAGSYHTIPSAGPSSSSSQKERLFPGRPGQPDCQYYMRTGDCKFGSSCKYHHPPELIAPRANVVLGPKGLPLRPVSI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1544529 1546406 - BLOR04041 Blo12g00022 67283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00022 335 Gene3D - 117 163 - -
Blo12g00022 335 SUPERFAMILY CCCH zinc finger 130 155 IPR036855 GO:0046872
Blo12g00022 335 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Blo12g00022 335 SUPERFAMILY CCCH zinc finger 290 313 IPR036855 GO:0046872
Blo12g00022 335 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Blo12g00022 335 Gene3D - 264 321 - -
Blo12g00022 335 SUPERFAMILY CCCH zinc finger 82 108 IPR036855 GO:0046872
Blo12g00022 335 ProSiteProfiles Zinc finger C3H1-type profile. 35 63 IPR000571 GO:0046872
Blo12g00022 335 SUPERFAMILY CCCH zinc finger 40 63 IPR036855 GO:0046872
Blo12g00022 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Blo12g00022 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 312 IPR000571 GO:0046872
Blo12g00022 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 62 IPR000571 GO:0046872
Blo12g00022 335 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 154 IPR000571 GO:0046872
Blo12g00022 335 PANTHER PROTEIN PHOSPHATASE RELATED 25 333 - -
Blo12g00022 335 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Blo12g00022 335 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 25 333 - -
Blo12g00022 335 Gene3D - 33 111 - -
Blo12g00022 335 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Blo12g00022 335 SMART c3hfinal6 35 62 IPR000571 GO:0046872
Blo12g00022 335 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Blo12g00022 335 SMART c3hfinal6 127 154 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g00181 Blo12g00022 CCT
Blo07g00181 Blo12g00022 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00181 Blo-Chr7:2281253 Blo12g00022 Blo-Chr12:1544529 3.33E-124 dispersed
Blo07g00555 Blo-Chr7:15168773 Blo12g00022 Blo-Chr12:1544529 7.30E-15 dispersed
Blo12g00022 Blo-Chr12:1544529 Blo10g00044 Blo-Chr10:418056 7.49E-19 dispersed
Blo12g00022 Blo-Chr12:1544529 Blo01g00086 Blo-Chr1:1154513 6.33E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12962 PF00642 zf-CCCH 3.00E-10 CL0537 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00022 - - peu:105121657 471.855