Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00030 ATGGGGAGCTTTGCCTTGCGGAGTCTCTCCTCTCGAAGAAGGTATCAAGTATGGAGCCTTGGATATTATCCTCTTCCTGATTGGTTGTGGAAGAAGAAGACAGTAGTTTCTAGAGTTGGGTTTTTGCAGTTCGCAAAGCTGGACAGCTACAAAGGAGACCGTCACGGCCCTAACCAAGATTCTCACTCCTACCGTCACAGAGCTCCTCCTCGCTTCTATGATGGCCCCATGAATCACCATGAGAACCGCCGTAGCCCTGGTGATTTCAGAGTAGGGGGTAACGGTGGTTACCAACGTTTTTACGACAGTCCGCCGGGTCATGCTCCTGGAAGTGGCAGTGGATTCTGGCCAATGGGTGGGGGAGGTGGTGGATTCCGGCCGATTGGTGCCGATGCTAGAGGATATGGGTCTAATCACCAGCCATCGCCTATGGTAGGACATAAACGAGGATATCCGTTTAATGGTCGGGGAGGATCTCCTGATAATTTTGATAATAGTAATTTTGCAAAGCTTTTTGTTGGATCCGTTCCACGGACAGCCACAGAAGAAGATATTCGTCCGTTGTTTGAAAAGCATGGGAATGTGATAGAGGTAGCTTTGATTAAAGATAAGAGGACGGGGCAGCAACAAGCCTTCACTAATGCAGGATGTTGTTTTATAAAATATGCAACCTCAGAGGAAGCTGATAGGGCAATTCGAGGTTTGCACAATCAGCATACGCTTCCTGGAAGTATGGGACCCGTTCAAGTTCGATATGCAGATGGAGAACGGGAGAGACTAGGTAGTGCTGTTGAGTTCAAATTGTTTGTCGGCTCGCTGAACAAACAAGCTACAGAGAAGGAAGTTGAGGAAATATTTTCTCCATATGGCCAAGTGGAAGATGTTTATCTTATGCGTGATGAATTCAAGCAAAGTCGTGGATGTGGATTCGTTAAGTATGCCAATAGAGATATGGCATTGGCGGCTATAAAGGGTCTTCATGGAATCTATATGATGAGGGGTTGTGATCAACCATTAACTGTTCGATTTGCTGATCCTAAGAGGCCTAGATCTGGAGATTCAAGGAGTGGTTTTGGAGGCCCTGGCCCTCACTTACAAGCACCATTGACTGACGATGACATTTGTGGCTTTAAGTGTCAGTTGCCTCCAAGGTCTAGTGACATGGCACTTCCTTTGAATTCGGGTGGTCCTGGAGGTTCCCTTCAGGGGTCAATAAATTCATCTTCTTCAACATCAAAGCAGAATTTCCTCCAACAATTTAGTTTAAATCTTCTGTCATTGTGTTTTAAATCTCCAGTACAAGGTCCTCCTGTTGGGCAGCAAGTATCGTCATTGCAGAAGCCTTTTCCGTCATCACCCCAATTCCCACCTTCTGCTCAATTACACCGTGAACCTTCAGCTTCCTTTTCACAACCGCAGGCATCCCTTTCATCAGTTTGGCCTCTTGGTGTGCAACAATATCCTCTTTCTTCCGGTCAGATCTCTTACAGCCAAGCTTCAACTTCCCAACAGCCTACTGGTGTAGTAAGTGGGCAGTCAGGTTCTCAGATTTCAGTTCCACAGCAGGCCTCACTTGTTACAGGGCTGCAAACACCTTTGAGTATCAACTTGCAACCTCATACTGCATCTACTCCCATCAATCAACAGCAGCATCCAGCACCTGTTCATCAATCTCCTTCTCAATTGGCTCAGATGCTGTCACAACAAACGCAAATTTTGCAGGCTAGCTTTCAGTCTTCACAACAGGCATTCTCCCAGCTGCAACAGCAGTTGCAGCTGATGCAACCTTCGAATCAAGGCTTATCGCCACGGCAAAATTCCCAGGCGTCTAAATTGCAGTGGACTGGAAATGTGCCGCATACCGCTGGCAGTGGCACTCCTATTGCTGTAGATGTATCTTCATCCACACCTGGTGCGTTTGCTGTTTCTTCAACTGCTCAGGCTGGAGCTTCTGCAAAATGTAATTGGACAGAACACACCTCCCCTGATGGTTACAAATACTATTATAATAGTGTGACTGGGGAAAGTAGGTGGGAGAAACCTGAAGAGTTTACATTACTTGAGCAGCAGCTACAAAAGCAGTCTCAGACCCAGTCCTTTCCTCCGTCCTCATCTTCTATATCGCTCCCTCAAAATCAGCAGATACAGTTTCAAGGTCCTCAACAAACCCATATACGAAGCCATCAGCAGTTACACGTACAGCAGCCTTCTATATCATCATCAGTTTGTGCCCTTTATATTTTTCTCCCTTTCTGTGTTCTGGACAGTCAACTATAA 2277 46.38 MGSFALRSLSSRRRYQVWSLGYYPLPDWLWKKKTVVSRVGFLQFAKLDSYKGDRHGPNQDSHSYRHRAPPRFYDGPMNHHENRRSPGDFRVGGNGGYQRFYDSPPGHAPGSGSGFWPMGGGGGGFRPIGADARGYGSNHQPSPMVGHKRGYPFNGRGGSPDNFDNSNFAKLFVGSVPRTATEEDIRPLFEKHGNVIEVALIKDKRTGQQQAFTNAGCCFIKYATSEEADRAIRGLHNQHTLPGSMGPVQVRYADGERERLGSAVEFKLFVGSLNKQATEKEVEEIFSPYGQVEDVYLMRDEFKQSRGCGFVKYANRDMALAAIKGLHGIYMMRGCDQPLTVRFADPKRPRSGDSRSGFGGPGPHLQAPLTDDDICGFKCQLPPRSSDMALPLNSGGPGGSLQGSINSSSSTSKQNFLQQFSLNLLSLCFKSPVQGPPVGQQVSSLQKPFPSSPQFPPSAQLHREPSASFSQPQASLSSVWPLGVQQYPLSSGQISYSQASTSQQPTGVVSGQSGSQISVPQQASLVTGLQTPLSINLQPHTASTPINQQQHPAPVHQSPSQLAQMLSQQTQILQASFQSSQQAFSQLQQQLQLMQPSNQGLSPRQNSQASKLQWTGNVPHTAGSGTPIAVDVSSSTPGAFAVSSTAQAGASAKCNWTEHTSPDGYKYYYNSVTGESRWEKPEEFTLLEQQLQKQSQTQSFPPSSSSISLPQNQQIQFQGPQQTHIRSHQQLHVQQPSISSSVCALYIFLPFCVLDSQL 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1992215 2001186 - BLOR04049 Blo12g00030 67291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00030 758 SUPERFAMILY RNA-binding domain, RBD 266 363 IPR035979 GO:0003676
Blo12g00030 758 PANTHER RNA BINDING PROTEIN 112 730 - -
Blo12g00030 758 MobiDBLite consensus disorder prediction 691 722 - -
Blo12g00030 758 MobiDBLite consensus disorder prediction 537 558 - -
Blo12g00030 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 346 IPR000504 GO:0003723
Blo12g00030 758 ProSitePatterns WW/rsp5/WWP domain signature. 656 681 IPR001202 GO:0005515
Blo12g00030 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 255 IPR000504 GO:0003723
Blo12g00030 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 332 IPR000504 GO:0003723
Blo12g00030 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 240 IPR000504 GO:0003723
Blo12g00030 758 ProSiteProfiles WW/rsp5/WWP domain profile. 650 683 IPR001202 GO:0005515
Blo12g00030 758 MobiDBLite consensus disorder prediction 342 365 - -
Blo12g00030 758 SUPERFAMILY WW domain 655 689 IPR036020 GO:0005515
Blo12g00030 758 Gene3D - 161 262 IPR012677 -
Blo12g00030 758 Gene3D - 263 352 IPR012677 -
Blo12g00030 758 MobiDBLite consensus disorder prediction 50 87 - -
Blo12g00030 758 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 112 730 - -
Blo12g00030 758 SMART rrm1_1 170 251 IPR000504 GO:0003723
Blo12g00030 758 SMART rrm1_1 267 342 IPR000504 GO:0003723
Blo12g00030 758 PRINTS Paraneoplastic encephalomyelitis antigen family signature 327 344 IPR002343 GO:0003723|GO:1990904
Blo12g00030 758 PRINTS Paraneoplastic encephalomyelitis antigen family signature 286 298 IPR002343 GO:0003723|GO:1990904
Blo12g00030 758 PRINTS Paraneoplastic encephalomyelitis antigen family signature 169 184 IPR002343 GO:0003723|GO:1990904
Blo12g00030 758 PRINTS Paraneoplastic encephalomyelitis antigen family signature 271 286 IPR002343 GO:0003723|GO:1990904
Blo12g00030 758 MobiDBLite consensus disorder prediction 437 472 - -
Blo12g00030 758 CDD RRM2_FCA 267 346 IPR034645 -
Blo12g00030 758 SUPERFAMILY RNA-binding domain, RBD 143 259 IPR035979 GO:0003676
Blo12g00030 758 CDD WW 653 683 IPR001202 GO:0005515
Blo12g00030 758 Pfam WW domain 655 681 IPR001202 GO:0005515
Blo12g00030 758 SMART ww_5 651 683 IPR001202 GO:0005515
Blo12g00030 758 MobiDBLite consensus disorder prediction 386 408 - -
Blo12g00030 758 MobiDBLite consensus disorder prediction 50 120 - -
Blo12g00030 758 MobiDBLite consensus disorder prediction 456 472 - -
Blo12g00030 758 Gene3D - 649 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00030 - - - zju:107407407 651.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00037 Blo12g00030 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00037 Blo-Chr1:473856 Blo12g00030 Blo-Chr12:1992215 0 dispersed
Blo07g00551 Blo-Chr7:14897872 Blo12g00030 Blo-Chr12:1992215 1.03E-09 dispersed
Blo10g00042 Blo-Chr10:391320 Blo12g00030 Blo-Chr12:1992215 7.53E-43 dispersed
Blo12g00030 Blo-Chr12:1992215 Blo01g00276 Blo-Chr1:3491730 4.09E-17 dispersed
Blo12g00030 Blo-Chr12:1992215 Blo05g00333 Blo-Chr5:3867423 3.36E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00030 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0