Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00048 ATGGATCCCGTGTCGGAAGCACGGGGCTCTGATTGTTTGGTGAGTCTGGAGTGCTTTCTGAACGTCATCAGGGCCCTTGGTATGGGGTGCTGCCTCTCTGGAGATACTGCCTCTTCCATTCGTGCCATTAAATATTTTCCGGTAGCTTCTACCTATGAGGAACAGGCCATATTACGGTGGAGGAATTCTAGGAGGAAGGTCATCAGAAGGGATTCCTCATCCTATAACTCTTTGGAATCGAAAATGGAGATGCGGCTTCATCGTATTCTTGGCAGGATGTTTTTGAATGGCTCTACAGATTCTGCTTCCCTCTTCACCAAGCAAGGCAGGAAAGGTGTTAATCAGGATTCAATGATTGTTTGGGAGAATTTTGGTTCAAAAGAAGACACAATTTTTTGTGGTGTCTTTGATGGCCATGGGCCAAATGGTCATTTAGTTGCTAAGAAAGTGAGGGATTCTCTTCCTTTAAAGCTAAGTGCCCAGTGGGAATTAGATGCTACGCGTAAGGATGGTCTTAATGGCAGCAGTCAGGATAAAAGGCAAGAGACAACCGAGGTTGCTCCATTTGAATTGATTAATAAGGATTCAAAAACCTTCCAGTGGGAGTGTCAAAGCAGTCACTATGAATCATTGATAACATTAACGAAGGCATTCTTGAAGGCTTTTAAAGTAATGGATAAAGAACTCAAGCTGCATCCTCAAATTGATTGCTTTTGCAGCGGGGCAACAGCAGCTACCGTTGTTAAGCAGGGGCAAGACCTTATTATTGGGAATCTTGGGGACTCGAGAATTATACTTGGTACAAAAGATGATGAATCACTGGTTGCTATACAGTTGACCGTAGATCTAAAGCCAAATCTCCCTAGAGAAGCTGAAAGAATAAATTATTGTAAAGGACGAGTTTTTGCTCTACCAAATGAACCTGAGGTTGCTCGAGTGTGGATGCCCAACTGTGACTGCCCTGGTCTTGCCATGGCTCGCGCATTTGGAGATTTTTGCTTAAAAGACTTTGGCTTGATCTCTGTCCCAGACATTTTCTATCATCGTGTCACTGAGAGGGATGAGTTTGTTGTACTTGCGACAGACGGGGTGTGGGATGTTCTTTCTAATCAAGAAGTGGTAGACATAGTTGGAGCTGCCTCAAAATCTTCTGCGGCTCGAGTTGTTGTGGAGTCAGCAATTCGAGCTTGGAGATACAAGCACCCTTTTGCTAAAATTGATGACTGCGCTGTAGTTTGCCTCTTCCTTAACTCAAACTCTGGCGATAGTTATTATGCAAAACCCAAAATTCTGGAGTTTCAGGAACCCCTCCCTAATGACTTCTGCAAATCCTCTTTTTGA 1341 43.92 MDPVSEARGSDCLVSLECFLNVIRALGMGCCLSGDTASSIRAIKYFPVASTYEEQAILRWRNSRRKVIRRDSSSYNSLESKMEMRLHRILGRMFLNGSTDSASLFTKQGRKGVNQDSMIVWENFGSKEDTIFCGVFDGHGPNGHLVAKKVRDSLPLKLSAQWELDATRKDGLNGSSQDKRQETTEVAPFELINKDSKTFQWECQSSHYESLITLTKAFLKAFKVMDKELKLHPQIDCFCSGATAATVVKQGQDLIIGNLGDSRIILGTKDDESLVAIQLTVDLKPNLPREAERINYCKGRVFALPNEPEVARVWMPNCDCPGLAMARAFGDFCLKDFGLISVPDIFYHRVTERDEFVVLATDGVWDVLSNQEVVDIVGAASKSSAARVVVESAIRAWRYKHPFAKIDDCAVVCLFLNSNSGDSYYAKPKILEFQEPLPNDFCKSSF 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3373115 3377035 + BLOR04067 Blo12g00048 67309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00048 446 CDD PP2Cc 101 416 IPR001932 -
Blo12g00048 446 Gene3D - 96 419 IPR036457 -
Blo12g00048 446 ProSiteProfiles PPM-type phosphatase domain profile. 101 416 IPR001932 -
Blo12g00048 446 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 28 422 - -
Blo12g00048 446 SMART PP2C_4 90 414 IPR001932 -
Blo12g00048 446 Pfam Protein phosphatase 2C 202 395 IPR001932 -
Blo12g00048 446 PANTHER ALPHABET, ISOFORM E-RELATED 28 422 - -
Blo12g00048 446 SUPERFAMILY PP2C-like 101 417 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01228 Blo-Chr2:44422699 Blo12g00048 Blo-Chr12:3373115 0 dispersed
Blo11g00408 Blo-Chr11:3551070 Blo12g00048 Blo-Chr12:3373115 6.58E-161 dispersed
Blo12g00048 Blo-Chr12:3373115 Blo18g00505 Blo-Chr18:6370709 1.15E-148 dispersed
Blo12g00048 Blo-Chr12:3373115 Blo17g00516 Blo-Chr17:8221869 9.16E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00048 - - twl:120005422 509.99