Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00063 ATGCTTACGCTATGGTTTAATGATATAAACCCAGATTTGAGATTCTTGGATTTGGAAGACAGAGAGGAAAGCAAGTGTTCTCCGAGAGGAGTTCTCGGTGATTGCTCGAGAAGCTTTGAATCTGAATCAGCTTCTTCAAAGGCCAGCAGCTCAGACTCAGAGGGCCAGTCAGATTCAAGAACAACGTCACAGTGGAATGGCTTCTTCCGCTTGTTGAGAAAAGGATCCGACATGATATTTCCCACCTTCACTCCACTTAAAACTTTCCATCCTCTTAAGACCTTTCCTCCTTTTAAGACCTTCTCTCCTCTGAAAGGCGTCCCAAAACTTACCAAAAGAAAAAGCAGAAGATTTCGAGATGTTTTGATTCCGCCCATTAACTCGCCCGTCAAAAACTGTTGCTTAGATGCTGACTTTTCCTGCTTCAAATCTTCATGGAAGAACTTCTCACTCTTGGAGCTCCAAATCGCAACCAACAACTTCAGACATGAAAATTTGATTGGGGAAGGGGGTTATGCTCAAGTTTACAAAGGTGAACTGGAGGATGGGGAACTTGTAGCAATTAAACGGCTTACAAGAGGAAGCCAAGAAGAAATGACCGCAGATTTCTTATCAGAGCTTGGAATTATTGTTCATGTTGATCATCCTAACATTGCAAAAGTTATTGGTTATGGGATTGAAGGCGGAATGCATCTTGTTCTTCATTTGTCTCCTCACGGGAGTCTCGCTTCAATCCTTTATGGAGATAGGAAGAGCCTTGATTGGGGAATCAGATATAAGGTTGCTTTAGGCATTGCAGATGGTCTTCTTTATCTTCATGAAGGCTGCCAAAGAAGAACAATACATAGAGACATCAAGGCTTCCAATATATTGCTTTCTGAGGATTTTGAACCTCAGATATCTGATTTTGGGCTTGCAAAATGGCTGCCAAACCAGTGGACTCACCACGTTGTATCAAAGTTTGAAGGCACATTTGGATATCTTCCTCCAGAGTTCTTCATGCATGGCATGGTTGATGAAAAAACTGACGTTTATGCTTTTGGCGTCCTGCTTTTAGAACTAATTACCGGGCGTCAATCTTTGGACAGCTCACAGCAGAGCCTCGTGATGTGGGCCAAACCTCTTCTCGCGCATCTGAATCTCAAGGAGCTTGCTGATCCTTGCCTTGCTTGTGCCTTTGACGTAGAACAGATGAATCACATGGTCATGGCCGCTTCCTTGTGTATTCATCAGTCTTCGGTTAATCGACCTCAAATGAGTCAGGTTGTTCGAATTTTGAAAGGAGAGGAAGGTGGTTTTGAGCTTCTAAAAAGTAGACAAAAGTCAAAACTTAAACCAACGTACTCAAAGGAGCTGTTTGACGCAGAAAAGTGTATTTCGAACGAGTACGTAAACGATCTTAGTCGTCACTTGGAGGTGGTTTTAGGCACTTCCAAATAG 1440 42.85 MLTLWFNDINPDLRFLDLEDREESKCSPRGVLGDCSRSFESESASSKASSSDSEGQSDSRTTSQWNGFFRLLRKGSDMIFPTFTPLKTFHPLKTFPPFKTFSPLKGVPKLTKRKSRRFRDVLIPPINSPVKNCCLDADFSCFKSSWKNFSLLELQIATNNFRHENLIGEGGYAQVYKGELEDGELVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIAKVIGYGIEGGMHLVLHLSPHGSLASILYGDRKSLDWGIRYKVALGIADGLLYLHEGCQRRTIHRDIKASNILLSEDFEPQISDFGLAKWLPNQWTHHVVSKFEGTFGYLPPEFFMHGMVDEKTDVYAFGVLLLELITGRQSLDSSQQSLVMWAKPLLAHLNLKELADPCLACAFDVEQMNHMVMAASLCIHQSSVNRPQMSQVVRILKGEEGGFELLKSRQKSKLKPTYSKELFDAEKCISNEYVNDLSRHLEVVLGTSK 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4371072 4373066 - BLOR04082 Blo12g00063 67324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00063 479 MobiDBLite consensus disorder prediction 25 62 - -
Blo12g00063 479 PANTHER PROTEIN KINASE FAMILY PROTEIN 22 456 - -
Blo12g00063 479 SUPERFAMILY Protein kinase-like (PK-like) 142 426 IPR011009 -
Blo12g00063 479 ProSiteProfiles Protein kinase domain profile. 161 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00063 479 Gene3D Phosphorylase Kinase; domain 1 134 235 - -
Blo12g00063 479 PANTHER OS08G0249100 PROTEIN 22 456 - -
Blo12g00063 479 SMART serkin_6 161 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00063 479 Pfam Protein tyrosine and serine/threonine kinase 164 426 IPR001245 GO:0004672|GO:0006468
Blo12g00063 479 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Blo12g00063 479 Gene3D Transferase(Phosphotransferase) domain 1 238 444 - -
Blo12g00063 479 MobiDBLite consensus disorder prediction 38 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00063 - - - csv:101216575 624.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00038 Blo-Chr10:328498 Blo12g00063 Blo-Chr12:4371072 2.81E-141 dispersed
Blo11g00483 Blo-Chr11:4406969 Blo12g00063 Blo-Chr12:4371072 5.84E-147 dispersed
Blo12g00063 Blo-Chr12:4371072 Blo14g00664 Blo-Chr14:14339869 2.06E-106 dispersed
Blo16g00311 Blo-Chr16:7712900 Blo12g00063 Blo-Chr12:4371072 5.75E-67 dispersed
Blo12g00063 Blo-Chr12:4371072 Blo18g00172 Blo-Chr18:1660993 6.49E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84558 PF07714 PK_Tyr_Ser-Thr 2.00E-40 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00063 Blo_Chr12 FPKM 30.452936 37.685158 25.714653 25.694513 17.086042 17.862225 17.200884 18.629322 16.138149 16.786121