Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00070 ATGAATCTACTCTCTCTTTGCTCGAAGCCATTCGTCCATGAAGCTGAAAGACTTGACTCTGTTGGAGTTGCCGGAGCTAGTTCTGGTGAAAGAGACGGGAAGGATTGCCTGCTTTGGTTCCATGATTTTGGCAATTACGCTTCCGGCGAATTCTCCCTGGATGTGGTGCAGGCGAACCTGGTTCTTGAGGACCATAGCCAGATTGAATCGGGACCTTTCGGCACTTTCGTTGGCGTCTACGATGGACATGGTGGCCCCGACGCAGCCCGTTATGTTTGTGATAACTTGTTTGGGCATTTCCAAGCATTATCAACCGAATTGAATGGAGCTGTGACTCCTGAATCAATTCGAAATGCTTTTCGCCGAACAGAGGATGGGTTCACTACCCTTGTCTCAGAGCTATGGAGTACTCAGCCCCAACTAGTAACTATTGGATCTTGTTGTTTAGTTGGAGTGATATGTCAGCAGACTCTCTTTGTGGCAAACCTTGGGGACTCCCGGGTTGTGTTGGGGAAAAAGGTTGGCGTTACAGGAGAGATTGCTGCCATCCAGTTGTCAGCTGAACATAATGCAAATCAGGAAGATGTTAGGCGGGAATTGAAAGAACTTCACCCAAATGATTCTCAAATTGTTGTTCTGAAGCATGGAGTTTGGAGAGTAAAAGGCATCATACAGTTTTTGCTAATAATTCTTCATGTAGAATTTGTATTTTATGTGCCTCGTACCAGAGGGCTATATATTAATTTTCTTAAAAATATAACCATAGAAGCATTTTCTGAATTTTGGAAGTTCCAAATATTTCTTTCATCTGCGTGCGTCATGAATAAGGTGATGCCTTCCACGTTTATTACTAGTTTTCTAATTTTCTTGGCATTTTTCTTTACATTTTGTGATATTTCAAGATCTACAGGTGATTTCTATATGAAACATTCCAAGTTCAATAACGAAAGGATTAGTGGAAAATTCAGAATTCCTGAACCAATGAGCACGCCAATTTTAAGTGCTGTTCCAGAAATTATTACGCATCGGATTCATCCAAATGACTCTTTTCTCATATTTGCATCTGATGGACTGTGGGAACACTTGAGTAATGAAAAAGCTGTGGACATAGTTCATAGTCATCCACGTGCCGGAAGTGCAAAGAGGCTAGTTGAGGCTGCACTTCAAGAGGCTGCTAGAAAAGAGTCGATGCTGGAAGGAGAGCGGCATTTGCATGGCCCAGAATTTGATCCTAAGGAGTATTCAGATCGGTCAGAATTCGAATCTAAAGTTCTTAAAGATTAG 1284 42.21 MNLLSLCSKPFVHEAERLDSVGVAGASSGERDGKDCLLWFHDFGNYASGEFSLDVVQANLVLEDHSQIESGPFGTFVGVYDGHGGPDAARYVCDNLFGHFQALSTELNGAVTPESIRNAFRRTEDGFTTLVSELWSTQPQLVTIGSCCLVGVICQQTLFVANLGDSRVVLGKKVGVTGEIAAIQLSAEHNANQEDVRRELKELHPNDSQIVVLKHGVWRVKGIIQFLLIILHVEFVFYVPRTRGLYINFLKNITIEAFSEFWKFQIFLSSACVMNKVMPSTFITSFLIFLAFFFTFCDISRSTGDFYMKHSKFNNERISGKFRIPEPMSTPILSAVPEIITHRIHPNDSFLIFASDGLWEHLSNEKAVDIVHSHPRAGSAKRLVEAALQEAARKESMLEGERHLHGPEFDPKEYSDRSEFESKVLKD 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4696951 4699802 + BLOR04089 Blo12g00070 67331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00070 427 CDD PP2Cc 54 397 IPR001932 -
Blo12g00070 427 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Blo12g00070 427 SUPERFAMILY PP2C-like 59 389 IPR036457 -
Blo12g00070 427 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 1 226 - -
Blo12g00070 427 PANTHER ALPHABET, ISOFORM E-RELATED 1 226 - -
Blo12g00070 427 SMART PP2C_4 41 388 IPR001932 -
Blo12g00070 427 PANTHER ALPHABET, ISOFORM E-RELATED 298 397 - -
Blo12g00070 427 ProSiteProfiles PPM-type phosphatase domain profile. 50 427 IPR001932 -
Blo12g00070 427 MobiDBLite consensus disorder prediction 395 427 - -
Blo12g00070 427 Pfam Protein phosphatase 2C 75 393 IPR001932 -
Blo12g00070 427 Gene3D - 44 410 IPR036457 -
Blo12g00070 427 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 298 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00070 Blo-Chr12:4696951 Blo04g00583 Blo-Chr4:5022477 3.02E-108 dispersed
Blo01g00034 Blo-Chr1:437461 Blo12g00070 Blo-Chr12:4696951 1.27E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00070 K01102 - zju:107419003 340.117