Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00084 ATGAAGGTGGCGAGATGCAGCTGTGGGAAATCACTGGTTCACGTATTTCTCTTTCCTCCTTTCCTTTCTGAAAATCCTAAATCATACCGCCTGTGCCTCTGCTATTCATTTTCTCTTCCTTCTATTCAATCAGCTTTCATTCCTTCGAGTGAAATTTTGGATCCGCGCATCATGAGCAAGTATGGTGTAGAGCCCGATTCTGAGACTCTCGACATCGTAAGCAAGGCCGCGGAGGAGAAACAGGTTGAGGTACTGATGAAGATTTATTGGGGAGATGCTCGCGAGAAGCTATGCGAAGCCATTGACAAGATTCCTCTCACCTGTCTCGTAATTGGAAATAGAGGGCTTAGCAAGCTTAAGAGAGCTCTGAGAGAGCTTCGATTTGATACCTTCTGCCTGCTCAATTCCGACATCCGTAGCAAAAGTTATGCTAGTTTGAAGGTGCAGATACGATGGAGTTATTCAGTTTTAATCTTCTCACCAGACACTGCAATTTTGCCTTCTGAATTCTTCAGAATGCCCGGTGTTGGGTGTTCTGAATTCAGAACGCTGGAGTTGGGTGTTCCGGCGTTCGGACGTTGGCACCCAGCTTTTTAA 597 45.9 MKVARCSCGKSLVHVFLFPPFLSENPKSYRLCLCYSFSLPSIQSAFIPSSEILDPRIMSKYGVEPDSETLDIVSKAAEEKQVEVLMKIYWGDAREKLCEAIDKIPLTCLVIGNRGLSKLKRALRELRFDTFCLLNSDIRSKSYASLKVQIRWSYSVLIFSPDTAILPSEFFRMPGVGCSEFRTLELGVPAFGRWHPAF 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5636560 5638625 + BLOR04103 Blo12g00084 67345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00084 198 CDD USP_Like 75 123 - -
Blo12g00084 198 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE SUPERFAMILY PROTEIN 44 123 - -
Blo12g00084 198 Pfam Universal stress protein family 73 123 IPR006016 -
Blo12g00084 198 Gene3D HUPs 21 125 IPR014729 -
Blo12g00084 198 PANTHER IMP2'P 44 123 - -
Blo12g00084 198 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 36 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00084 - - - jre:108994810 123.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00150 Blo12g00084 CCT
Blo02g00478 Blo12g00084 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00084 Blo-Chr12:5636560 Blo13g01058 Blo-Chr13:32847970 8.69E-21 dispersed
Blo12g00084 Blo-Chr12:5636560 Blo02g00478 Blo-Chr2:6988987 9.68E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g76 . Blo12g00084 Bda03g01174 . Bpe04g01113 Bpe14g01101 . . . . . Cma14g01591 Car06g01325 Car14g01405 Sed12g0777 Cpe08g00153 Cpe03g01331 Bhi01g01084 Tan10g1071 Cmetu06g1226 . Hepe05g1388 . Lcy11g1343 . . . . . . . Cone14ag0723 Cone15ag0732 . . Lsi05g01588 . . Cme06g00783 Blo02g00478 Blo07g00150 Bda11g00504 Bda13g00215 . Bpe13g00693 . Bma06g01471 . . Cmo14g01623 . . . . . . . . . . . . . Cla05g00701 Cam05g0767 Cec05g0776 Cco05g0769 Clacu05g0757 Cmu05g0723 Cre05g0797 . Csa03g01513 Chy06g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033503 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00084 Blo_Chr12 FPKM 4.091735 5.992655 33.585648 35.436333 41.52317 40.060234 45.340908 19.667313 20.129656 20.172895