Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00085 ATGTCAAGTTTAGAGTTATCCTTCGACGATTTCTACCAAGATTTTGCTAGTGAACGAGGAAATGATGGACGATCGAGAGCTCCTTCTTGTGTAGCACAAGATTGGGGGAAGAATGGAGGATCTAATTCTTCGAGCTTTGAGTGTGATTTCTGGAAAGAGAATTCAGGCCGGCATGATCGTCAAAGCTCGAACATTTTTGATGACTTGGATGGGTTGCAGTTTGAAATGGATTCTCCCTCGTTTCAAATTGGTTTGGAGAGTACTGAAAAGCTTAGAAAAAGTCCAACTGATTTCCCGGAAAATCAATCCAAGTTTGATATATCGGAAACCTGTGCCATGGACAATTTGAATCTCAACAGAATCGGAAAGAACAGTAGGAAAATTGAAGAGCCTAGGGAGAAGAAATACGGGTTTTCGTTTTCTTCGCTTGCACTTTTGAGGAATTACGACTCTGGATTCAGATTGAATATGGACAAACGAATCGAGACAAGTAGTGATACAGAGGAAGCCGGATGGGAATTATCTACTGGAGAAATCATGAAGATTGCTGGTACAAAGTTCATTCGGTCATTTTCTGGAGCAGGGGACGTCCACTCCATGATCGATCATCCCTTTGATGTTTCCTTCTCTTCTCTATCAGCTGAAGAGATCAAAGACGTACAACTTGCTGAAATCCTCCTCGCTTCTGCCGAGAAAGTTGGAGCTCAACAATATGAACGAGCAAGCAATTTACTTAAACAGTGTAACTACTTGTCTTCGAACGTCGGGAGTCCTGTCCAACGAATTGTTTATTACTTTTCCGAAGCTCTTAGGGAAAGGATTGATCGAGAAACCCGAAAACTCACGGAAGAAAGCTTGGGAAATCATCAATCATTCAACATCGATGAAGCTTTGATGAGTCCGAATTCCACAATACTTGCGTATCAAGAAAAAATTCCCTTCGGACAGACTGGACAATTTGCTGGAATCCAAGCAATAATTGAGAAAATTGGGAACGCAAAGAAGGTTCACGTGATCGATCTTGCAATAAGAAATGGAATTCAATGGACGGTTCTTATGCAGGCTCTTTCTTCTCGTTCCGAATGTCCTGTCGAACTTCTGAAGGTGACAGCAATCGGGACTAATCTCGAGCATTTGATTGAAGATACTGGGAGGAGGTTGGAGAGTTTTGCTCAGACTATGAATTTACCTTTTTGCTTCAAAGCAATCATAGTTTCGGACATGCTAGATCTTAGAAGAGATCAGTTTGACCTAGATTCTGACGAAACAGTGGCCATCTACACAGAATACTTCCTCAGAAGCATGATACCGCAACCTGATCGATTGGAATCTCTGATGAGAGTTATCAGAAACATCAAACCCTCTCTAATGGTGATCGCAGAAGTTGAGGCGAACCATAACTCGCCATTTTTGGTGAAGAGATTTGTGGAAGCTCTTTTCTTCTTCAGTGCACACTTCGATATCCTTGAAACCTTCACGAAACGCGACGATCCAAACAGAATAATCGCAGAATCATTATTCTTTGGTGAGGGAATCAGGAACATCGTAGCGAGGGAGGGAGATGAACGGACGAATCGGAACGTCACCATGGATGTTTGGAGGGCATTTTTCAGTCGGTTTGGAATGGCGGAGATGGAACTGAGCTCCTCCTCCCTGTACCAGGCAAGCCTAGTGGTTAAGAGATTTGGTTGCAGCCGCTCTTGCACTCTGAGAATGAATGGGCCAAGCCTGATAATTGGGTGGAAGGGTACGCCAATGCAGTCTCTTTCAGCGTGGAAGTTTGTTTGA 1788 43.23 MSSLELSFDDFYQDFASERGNDGRSRAPSCVAQDWGKNGGSNSSSFECDFWKENSGRHDRQSSNIFDDLDGLQFEMDSPSFQIGLESTEKLRKSPTDFPENQSKFDISETCAMDNLNLNRIGKNSRKIEEPREKKYGFSFSSLALLRNYDSGFRLNMDKRIETSSDTEEAGWELSTGEIMKIAGTKFIRSFSGAGDVHSMIDHPFDVSFSSLSAEEIKDVQLAEILLASAEKVGAQQYERASNLLKQCNYLSSNVGSPVQRIVYYFSEALRERIDRETRKLTEESLGNHQSFNIDEALMSPNSTILAYQEKIPFGQTGQFAGIQAIIEKIGNAKKVHVIDLAIRNGIQWTVLMQALSSRSECPVELLKVTAIGTNLEHLIEDTGRRLESFAQTMNLPFCFKAIIVSDMLDLRRDQFDLDSDETVAIYTEYFLRSMIPQPDRLESLMRVIRNIKPSLMVIAEVEANHNSPFLVKRFVEALFFFSAHFDILETFTKRDDPNRIIAESLFFGEGIRNIVAREGDERTNRNVTMDVWRAFFSRFGMAEMELSSSSLYQASLVVKRFGCSRSCTLRMNGPSLIIGWKGTPMQSLSAWKFV 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5701876 5703663 + BLOR04104 Blo12g00085 67346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00085 595 MobiDBLite consensus disorder prediction 17 44 - -
Blo12g00085 595 Pfam GRAS domain family 223 593 IPR005202 -
Blo12g00085 595 ProSiteProfiles GRAS family profile. 213 593 IPR005202 -
Blo12g00085 595 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 59 593 IPR005202 -
Blo12g00085 595 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 59 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00085 - - - pvy:116122852 600.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00248 Blo-Chr5:2792593 Blo12g00085 Blo-Chr12:5701876 1.87E-144 dispersed
Blo05g00249 Blo-Chr5:2801168 Blo12g00085 Blo-Chr12:5701876 9.72E-149 dispersed
Blo12g00085 Blo-Chr12:5701876 Blo18g00464 Blo-Chr18:5297705 1.95E-50 dispersed
Blo12g00085 Blo-Chr12:5701876 Blo01g00753 Blo-Chr1:10017385 2.20E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g81 . Blo12g00085 Bda03g01173 . Bpe04g01111 . Bma04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018085 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12963 PF03514 GRAS 1.60E-86 CL0063 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00085 Blo_Chr12 FPKM 4.269841 3.607755 12.626496 10.631297 9.64251 9.395918 8.342478 8.464734 7.288113 7.552106