Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00090 ATGAATCTGAATCAAGGCAAGGGATCTATGACGACAGCTAGTCCTAGTGCTGCTCTCAAATCCGGCGAATTTGTTCCCGACCAATTTCCGGCGGGTCTACGAGTTCTGGTCGTCGATGACGATCCGACCTGCTTGAGGATCTTGGAGAAGATGCTTCAATTTTGTCTCTACAACGTTACCAAATGCAATCGAGCAGAGATTGCGTTGTCTAAGCTTCGAGATAACAAAAACGGCTTTGATGTTGTAATTAGCGATGTCCACATGCCAGATATGGATGGATTTAAGCTCTTAGAACACATTGGCCTAGAAATGGACTTACCCGTTATCATGATGTCTTCCGATGAAGGGAAAGATGTTGTCATGAAGGGAGTGACTCATGGCGCTTGTGATTATCTCATAAAACCCGTTCGAATTGAGGCTTTGAAGAACATATGGCAACATGTAGTTCGGCGGAAGTGGAATGAGTGGAAGGATCTAGAACAATCTGGAAGTGTGGAAGATGGTGATAGGCTGCAGAAAAATTGTGACGAAGTGGACTACTCGTCCTCGGCAAATGAAGGAAATTGCAAAAATTTGAAGAGGAGGAAGGACGACGAAGAAGAAGCAGAGGAACGAGAAGATTCATCGACATTGAAGAAGCCACGTGTTGTTTGGTCAGTCGAGCTTCATCAACAGTTTGTTGCTGCTGTTAACCAACTAGGCATTGAAAAGGCTGTTCCTAAGAAAATTTTGGAGTTGATGAATATTCCGGGACTCACTCGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGTTTGTATCTGAGAAGGCTCAGTGGAGTTTCACCACACACAAGTAATTTGAACAATTCTTTCATGACCCCACAAGAAGCAATGTTTGGGCCGATTTCAGCACTCAACGGGATTGATCTTCAGGCTCTTGCTGTCGCTGGAAAACTCACACCCCAAAGTCTTGCCTCACTTCAAGCTTCCGGGCTTGGTAGATCTTCGCCAAAATCCAACTTAATATCTGATCAGAGGAACATTTTTAGCTTTGAAAATCCAAAATTAAGATTTGGTGAGGCCCAGCCTCAGCATGTCAACAGTAGTAAACCAATAAATTTACTCCATGGAATCCCCACCACCATGGAAGCAAAGCAGCTTGCAAATTCGGGCCAATCTGCACAATCCCATGGAGGCATGAATATGCAAGTAAACATCCATGGAGGCCAAACCAACTCTATAGTAACGCAGATGGTGCAACCTCAATCATCAATCAGACAGTCGATCAGAATTCCTGGTGGGGTTTTGACAAACAATCTACCTCCACCAGAAACTTCTATTTTCAATTTTCCAATGAACCAAACAGCCGACTTTCCAGGAAATAGTTTGCCTTTTGAAACAGCACCAGCTATTCTTAGTCCTCCATCTAAAGGGACATTCCCTGAAGAATTAAATTTAGAAATAAAACAATCGGGAAGATTTATGTCAAATTATGATGTATTTAATGACTTGCACGAGGAGAAATCTCGGGATTGGAACTTGCAGAATCCCGGCTTGAACTTCAATCCCTCTCATGGAGACCTGGATATCTCATCTTCAGGTTTACATAATCAAAACTTTGCCAATGGCCAAAGGTTTAGACAGGAAATCAATGTTTCTGCGACTCGGCATGAGAATGGACAGATTGGCGGACAGCAACTGAATTCTATACTTTTTGACAATCCAGTAAAGGTCAAAGCTGAGACAATTCCAGATCCAAGTTGTGTCTTATTTCCGGAAAACTTCGAAGGGGATGATCTAATGAGTGCCCTTTTGAGACAACAAGAAAATTTCGGACCAGTCTCCGCCGAAAGCAAATATGACTTCGACAGTTGCTTTGGGTGGTCTATGAAGGAACATGTAAAATACTTGACCATGTCATTGCAAAATGGTGACATGAAAGGTTTTTCCCCTCCCAGTTTTTCTGATTTTGGCACTGTGGTTTTAGTTATATTTGCTGAAGCTCTTCTGTCTGCTGTTGAATCATGTCATCTTTGTAAGGGGAAGCCTTTCAACTCGGAATAA 2046 42.62 MNLNQGKGSMTTASPSAALKSGEFVPDQFPAGLRVLVVDDDPTCLRILEKMLQFCLYNVTKCNRAEIALSKLRDNKNGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSSDEGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRKWNEWKDLEQSGSVEDGDRLQKNCDEVDYSSSANEGNCKNLKRRKDDEEEAEEREDSSTLKKPRVVWSVELHQQFVAAVNQLGIEKAVPKKILELMNIPGLTRENVASHLQKYRLYLRRLSGVSPHTSNLNNSFMTPQEAMFGPISALNGIDLQALAVAGKLTPQSLASLQASGLGRSSPKSNLISDQRNIFSFENPKLRFGEAQPQHVNSSKPINLLHGIPTTMEAKQLANSGQSAQSHGGMNMQVNIHGGQTNSIVTQMVQPQSSIRQSIRIPGGVLTNNLPPPETSIFNFPMNQTADFPGNSLPFETAPAILSPPSKGTFPEELNLEIKQSGRFMSNYDVFNDLHEEKSRDWNLQNPGLNFNPSHGDLDISSSGLHNQNFANGQRFRQEINVSATRHENGQIGGQQLNSILFDNPVKVKAETIPDPSCVLFPENFEGDDLMSALLRQQENFGPVSAESKYDFDSCFGWSMKEHVKYLTMSLQNGDMKGFSPPSFSDFGTVVLVIFAEALLSAVESCHLCKGKPFNSE 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6259518 6262422 + BLOR04109 Blo12g00090 67351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00090 681 CDD REC_typeB_ARR-like 35 149 - -
Blo12g00090 681 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Blo12g00090 681 MobiDBLite consensus disorder prediction 189 210 - -
Blo12g00090 681 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Blo12g00090 681 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Blo12g00090 681 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Blo12g00090 681 SUPERFAMILY CheY-like 32 156 IPR011006 -
Blo12g00090 681 PIRSF RR_ARR_type-B 9 614 IPR017053 GO:0003677|GO:0003700|GO:0009736
Blo12g00090 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 417 IPR045279 GO:0009736
Blo12g00090 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 417 - -
Blo12g00090 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 439 589 - -
Blo12g00090 681 SMART REC_2 33 145 IPR001789 GO:0000160
Blo12g00090 681 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Blo12g00090 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 439 589 IPR045279 GO:0009736
Blo12g00090 681 MobiDBLite consensus disorder prediction 177 210 - -
Blo12g00090 681 Gene3D - 210 272 - -
Blo12g00090 681 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Blo12g00090 681 Gene3D - 33 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00772 Blo-Chr1:11099972 Blo12g00090 Blo-Chr12:6259518 9.23E-125 dispersed
Blo07g00160 Blo-Chr7:2078173 Blo12g00090 Blo-Chr12:6259518 0 dispersed
Blo08g00530 Blo-Chr8:15145143 Blo12g00090 Blo-Chr12:6259518 1.80E-104 dispersed
Blo12g00090 Blo-Chr12:6259518 Blo16g00756 Blo-Chr16:31212837 1.12E-110 dispersed
Blo13g01068 Blo-Chr13:32873275 Blo12g00090 Blo-Chr12:6259518 1.14E-23 dispersed
Blo12g00090 Blo-Chr12:6259518 Blo01g00060 Blo-Chr1:747686 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12964 PF00072 Response_reg 4.10E-22 CL0304 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00090 - K14491 qlo:115994534 779.63