Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00104 ATGGTTATCACCACGGAAGAGAGCGTGATCAGAAAGACCGGACTGACTTCTGTCGGCCCCGGAAAGATGACCGGGACGGACGTCGTGCATGAGCAGACCGGTATGGATCTAAGCGCGAAGCTCCATTACCTGAGGGGAGTGTACTTTTTCAGAAGCGAGGCGTTGAGAGACCTGACCATGAAGAAGCTGAAGGAGGCGATGTTCATCTGGTTCAATGGCTACTACATGACCTGCGGTAGGTTCAGAAGATGGGACTCCGGCAGGCCGTACATCAAATGCAATGACTGCGGGGCGAGGTTCGTGGAGGCCGAGTGCGATCTGACGATAGAGGAATGGCTGGAGAAGAAGGACTGGTCTGCGCAGACTCTCCTTTTTCCGCAGCAAGTCATTGGACCTGAACTTGCCTTCTCTCCTCCTCTTCTCTTTCAGCAGCACACTACATTCAAATGCGGTGGAATTTCACTGGGTCTGAGCTGGTCCCACGTTCTCGGAGACATATACTCCGCCGCAGAATTCATGAACTCCTTGACCCATTTCCTTTCCGGTTCCCGACCTACCAAGTCTCCGACCACCTTTGCCAAACCCATCTCCAAATCTGAAATACCCAAGAACCCACCTTCTATCAATGAGAGGGATCCACTTTCCCTCAAACGGGTCGACCCGGTTGGAGAGCTTTGGACGACTGTCACCAGCTGCAAGATGGAAACCTTCTCCTTCCATTTAACTTCTGCCCATATAAAAACTCTCCAGTCAGAAACCGATCAGCTTCCGCTTTTTGAATCTGTATGTGCACTTCTCTGGCATTGCATAGCCAAAGTTAGAATTGGATCAGAACCCAGAACTGTGACGATTTGCAAAGCTTCTCCATATCGGCGAACAGACGCAGTGATAGGAAACAATCAGATCACAATTTGCACAGTGGAGGCAGATTTGTCGATCAAACACGAAGACCCAAAAATATTGGCCAAATTTCTAGCTAGTAAAGCTCTAGACGAAACAACCCAGATCGAAAACTTAGTTGACCAAGATAACGGGGCAAGTGATTTCATAGTGTATGGAGCTAACTTGACGTTTGTGGACTGGGAAGACACTGACTTCTACGGACTGGAATTGAATAAACAAAAACCAGCTCTTGTTTACTACACAATCCAGGAAGTTGGTGAAGAAGGAGTTGTTCTGGTGCATCCATGGCCAAAAAACTATAGAAACGATAACGACGGTGGTGAAGAAGGGAGATTAGTGACAGTGACTTTGCCGGAGAACCAAGTGTCGGAGCTGAAATCTGAGTTGCTAATGAAGGGTCTTATTTAG 1311 48.28 MVITTEESVIRKTGLTSVGPGKMTGTDVVHEQTGMDLSAKLHYLRGVYFFRSEALRDLTMKKLKEAMFIWFNGYYMTCGRFRRWDSGRPYIKCNDCGARFVEAECDLTIEEWLEKKDWSAQTLLFPQQVIGPELAFSPPLLFQQHTTFKCGGISLGLSWSHVLGDIYSAAEFMNSLTHFLSGSRPTKSPTTFAKPISKSEIPKNPPSINERDPLSLKRVDPVGELWTTVTSCKMETFSFHLTSAHIKTLQSETDQLPLFESVCALLWHCIAKVRIGSEPRTVTICKASPYRRTDAVIGNNQITICTVEADLSIKHEDPKILAKFLASKALDETTQIENLVDQDNGASDFIVYGANLTFVDWEDTDFYGLELNKQKPALVYYTIQEVGEEGVVLVHPWPKNYRNDNDGGEEGRLVTVTLPENQVSELKSELLMKGLI 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7479403 7481006 + BLOR04123 Blo12g00104 67365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00104 436 Gene3D - 226 430 IPR023213 -
Blo12g00104 436 Gene3D - 7 211 IPR023213 -
Blo12g00104 436 PANTHER PROTEIN ECERIFERUM 26-LIKE 9 428 - -
Blo12g00104 436 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 428 - -
Blo12g00104 436 MobiDBLite consensus disorder prediction 189 213 - -
Blo12g00104 436 Pfam Transferase family 42 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00104 - - - zju:107422281 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00008 Blo-Chr11:77499 Blo12g00104 Blo-Chr12:7479403 2.91E-118 dispersed
Blo12g00104 Blo-Chr12:7479403 Blo12g00734 Blo-Chr12:25666278 8.74E-109 dispersed
Blo12g00104 Blo-Chr12:7479403 Blo01g00335 Blo-Chr1:4021244 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g929 . Blo12g00104 Bda03g01139 . Bpe04g01082 . Bma04g01163 . . . . . . . . . . . . . . . . . Cla06g00775 Cam06g0826 Cec06g0842 Cco06g0848 Clacu06g0829 Cmu06g0801 Cre06g1582 . Cone15ag0263 . . . . Chy05g00577 . . . . . . . . . Sed04g2086 . . . . . . . . Bhi12g01477 Tan06g2283 Cmetu05g0705 Lac12g2014 Hepe03g0377 . . . . . . . . . Lsi09g01123 . . Cme05g00735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009078 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00104 Blo_Chr12 FPKM 271.837311 278.762512 90.141518 82.747955 76.810059 94.172951 79.275902 105.674637 111.629898 106.121056