Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00110 ATGGGGGATGTTACAAGTGAGTCCGTGGAGAATCGGAGGAAGGCAATCAAGCTCCCGATCCTAGGGAAGAGGAACATTCTCATCACCAGCGCCTTGCCCTATGTCAACAACGTCCCTCATCTCGGCAACATCATTGGATCAGGTGTTCTTAGCGCTGATGTTTTTGCTAGATACTGCCGTCTTCGAGGTTACAATGCCATATACATGTGTGGAACAGATGAGTACGGTACAGCAACAGAGACCAAAGCCATGGAAGAGAACTGTACGCCTAAAGAAATCTGTGACAAGTACCATGCAATTCATAGGAAAGTTTACGAATGGTTTGATATCAGCTTTGATGAATTTGGTAGAACATCATCCCCTCAGCAGACTGAAATTTGCCAGGCAATTTTTAAAGATCTGTTGAAGAACAATTGGTTAATTGAGAAGACTATGAATCAGCTTTACTGTGATAAATGCAAAAAGTTCTTAGCTGATCGTCTTGTGGAAGGCACCTGCCCCACTCTGGGTTGCGAGTATGACTCTGCTAGAGGTGATCAGTGCGAAAAATGTGGAAAGCTCTTTGATCCAACAGAATTAATAGATCCAAGGTGCAAGGTTTGCCAAACTACTCCTCATAGTCGTGAAACAGATCATTTATTTCTTGATCTACCGCGATTGAAAGAGAAATTGAACGAATACATCGACAAAACATCAGTGGCTGGATCTTGGAGTCAAAATGCCATTCAAACAACAAATGCATGGCGTAAAGAAGGGCTCAAACATCGGTGTATTACTAGGGATTTGAAGTGGGGGGTTCCTGTTCCTCTTGAGAAATTCAAGGATAAGGTTTTTTATGTCTGGTTTGATGCCCCTATTGGATATGTATCAATCACTTCATGCTACACTCAAGAATGGGAGATGTGGTGGAAGAATCCTGAAAATGTGGAGCTTTATCAGTTTATGGGAAAGGATAATGTGCCATTCCACACAGTGATGTTTCCTTCCACTCTTCTCGGGACAAGTGAAAACTGGACTTTGATGAAAACTATTAGCGTTACTGAGTATTTGAACTACGAATCAGGCAATAAGGGCATAGGGGTTTTTGGCAATGATGCTAGAGATACAAGTATCCCAGTTGAAGTATGGAGATATTACTTGTTAACTAATAGGCCCGAGGTCTCAGACACCTTGTTTACATGGGCGGACTTGCAAACTAAATTAAATGGCGAGTTGTTAAATAATTTGGGCAACTTTATCAACCGAGTGTTGAGTTTTATTGCCAAACCTACAGGACAGGGTTATAATTCTATTATTCCTGATGCTTCTGATGTGAAGTTGCATGACCTAACGGGGAAATTCACTGAAAAAGTTGGTAAGTACATGGACCAATACGTTGAGTCCATGGAGAAGGTCAAACTGAAACAAGGACTAAAAGCTGCAATGGCCATTTCTAGCGAGGGTAACACTTATCTGCAAGCTAGCCAATTTTGGAAACTTTACAAGGAAGATCAAGCTTCGTGCTCCATAGTGATGAGAACTTCAGCCGGAATAGTCTATGTTCTTGCATGTTTATTAGAACCTTTCATGCCTTCTTTCTCTCGTGAGGTATTTAAGCAGCTTAATTTGTCTCCTGAGATACAATTTTCACTTTGTGAGGAAAATGGAGACTTTGCTAAGGCAAAACGACCTTGGGAGATATTGTCTTGTGGTCACAAAATAGGGACTCCGGAGCCATTGTTCAAGGAAATGTTTGTTACGCCATGTACTTGTCTTTTTTTTCCCCAGAAAGATGAAGAAGTGGAAGTTTACAGGAAGAAGTTTGCTGGAAGTCAAGCTGAAAGGATTGTGAGAGCAGAAGCTGAAGCGGGGAAGCTTGCTGAGCAACTGAAGAAAACTAAAGTCACAGATGGTGCCGGAAAAAAGCAACCACCAACCAAATTAGCTTCTGCTTCCAAATCTAAAACTACTGTTGAACCAGAAATTTCTGTTAGTAGATTGGATATTCGTGTTGGCCTCATTACAAAAGCGCAAAAGCATCCTGACGCAGATTCACTTTATGTGGAAGAGATCGATGTGGGTGAGGAATTCCCTCGAACGGTTGTCAGTGGACTGGTCAAATACATACCTCTTGAAGAAATGCAGAAACGGAAGGTCTGTGTTCTTTGCAACCTGAAGCCAGCAACCATGCGGGGTATTAAATCACAAGCAATGGTTCTTGCAGCCTCCAATAGTGACCACACCAAGGTCGTTGAGTTGGTTGAACCACCCAAAACTGCTCAAGTAGGGGAAAGAATTACATTTGCGGGGTTTCAAGGCGAGCCTGATGATGTCTTGAATCCTAAGAAGAAGGTGTGGGAAACACTGCAGGTAGATTTACATACAAACTTGAGAGGAGAGGCATGTTTCAAAGATATTCCATTTGCCACGTCAAGCGGTATTTGTGCAGTTGCTTCTATCTCCGATGGATCTATTAGATAA 2460 42.15 MGDVTSESVENRRKAIKLPILGKRNILITSALPYVNNVPHLGNIIGSGVLSADVFARYCRLRGYNAIYMCGTDEYGTATETKAMEENCTPKEICDKYHAIHRKVYEWFDISFDEFGRTSSPQQTEICQAIFKDLLKNNWLIEKTMNQLYCDKCKKFLADRLVEGTCPTLGCEYDSARGDQCEKCGKLFDPTELIDPRCKVCQTTPHSRETDHLFLDLPRLKEKLNEYIDKTSVAGSWSQNAIQTTNAWRKEGLKHRCITRDLKWGVPVPLEKFKDKVFYVWFDAPIGYVSITSCYTQEWEMWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYESGNKGIGVFGNDARDTSIPVEVWRYYLLTNRPEVSDTLFTWADLQTKLNGELLNNLGNFINRVLSFIAKPTGQGYNSIIPDASDVKLHDLTGKFTEKVGKYMDQYVESMEKVKLKQGLKAAMAISSEGNTYLQASQFWKLYKEDQASCSIVMRTSAGIVYVLACLLEPFMPSFSREVFKQLNLSPEIQFSLCEENGDFAKAKRPWEILSCGHKIGTPEPLFKEMFVTPCTCLFFPQKDEEVEVYRKKFAGSQAERIVRAEAEAGKLAEQLKKTKVTDGAGKKQPPTKLASASKSKTTVEPEISVSRLDIRVGLITKAQKHPDADSLYVEEIDVGEEFPRTVVSGLVKYIPLEEMQKRKVCVLCNLKPATMRGIKSQAMVLAASNSDHTKVVELVEPPKTAQVGERITFAGFQGEPDDVLNPKKKVWETLQVDLHTNLRGEACFKDIPFATSSGICAVASISDGSIR 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7927434 7942132 + BLOR04129 Blo12g00110 67371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00110 819 Gene3D HUPs 25 405 IPR014729 -
Blo12g00110 819 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 15 819 - -
Blo12g00110 819 CDD Anticodon_Ia_Met 401 534 IPR041872 -
Blo12g00110 819 TIGRFAM metG: methionine--tRNA ligase 26 558 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Blo12g00110 819 Coils Coil 609 629 - -
Blo12g00110 819 Gene3D - 406 576 - -
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 313 328 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 278 289 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 404 415 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 62 76 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 110 121 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 CDD tRNA_bind_EMAP-II_like 655 760 - -
Blo12g00110 819 Gene3D - 655 819 IPR012340 -
Blo12g00110 819 SUPERFAMILY Nucleic acid-binding proteins 656 817 IPR012340 -
Blo12g00110 819 Pfam Anticodon binding domain of methionyl tRNA ligase 446 605 IPR041872 -
Blo12g00110 819 CDD MetRS_core 25 392 IPR033911 GO:0004825|GO:0006431
Blo12g00110 819 Pfam Putative tRNA binding domain 662 757 IPR002547 GO:0000049
Blo12g00110 819 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 162 198 IPR029038 -
Blo12g00110 819 ProSiteProfiles tRNA-binding domain profile. 656 760 IPR002547 GO:0000049
Blo12g00110 819 PANTHER METHIONINE--TRNA LIGASE 15 819 IPR023458 GO:0004825
Blo12g00110 819 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo12g00110 819 MobiDBLite consensus disorder prediction 625 648 - -
Blo12g00110 819 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 405 575 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo12g00110 819 SUPERFAMILY Nucleotidylyl transferase 23 402 - -
Blo12g00110 819 Gene3D - 162 198 IPR029038 -
Blo12g00110 819 Pfam tRNA synthetases class I (M) 26 417 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00110 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csin:114267413 1320.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00429 Blo-Chr5:5799790 Blo12g00110 Blo-Chr12:7927434 3.95E-24 dispersed
Blo05g00430 Blo-Chr5:5807555 Blo12g00110 Blo-Chr12:7927434 0 dispersed
Blo12g00110 Blo-Chr12:7927434 Blo16g00761 Blo-Chr16:31411357 1.94E-12 dispersed
Blo13g00890 Blo-Chr13:31463921 Blo12g00110 Blo-Chr12:7927434 2.78E-46 transposed
Blo16g00762 Blo-Chr16:31435475 Blo12g00110 Blo-Chr12:7927434 3.55E-14 transposed
Blo01g00334 Blo-Chr1:4012410 Blo12g00110 Blo-Chr12:7927434 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00110 Blo_Chr12 FPKM 18.585943 23.832691 2.911206 3.090573 2.607894 5.172324 4.497204 8.917039 8.606835 9.830119