Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00113 ATGGGTAAGGAAAAGGTTCACATCAATATTGTGGTCATTGGCCATGTCGACTCTGGCAAGTCTACCACTACTGGCCACCTTATCTACAAGCTTGGAGGTATTGACAAACGAGTGATTGAGAGATTTGAGAAGGAGGCTGCTGAAATGAACAAGAGGTCATTCAAGTATGCATGGGTGCTCGATAAGCTTAAGGCAGAGCGCGAGCGTGGTATTACCATTGACATTGCATTGTGGAAGTTTGAGACCACTAAATACTACTGCACTGTCATTGATGCTCCTGGACATCGCGACTTTATCAAAAACATGATTACTGGAACTTCCCAGGCAGACTGTGCTGTTCTCATCATAGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGGCAGACACGTGAGCATGCCCTCCTTGCTTTCACTCTAGGAGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCTACAACACCCAAGTATTCTAAGGCAAGGTACGATGAAATTGTTAAAGAAGTATCTTCTTACCTGAAGAAGGTTGGATATAACCCTGACAAGATTCCTTTTGTTCCCATTTCTGGCTTTGAGGGAGACAACATGATTGAGAGATCTACAAACCTTGATTGGTACAAGGGTCCGACCCTCCTTGAAGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCTTCGGACAAGCCTCTTCGTCTCCCACTGCAGGATGTTTACAAGATTGGTGGTATTGGCACTGTCCCAGTGGGTCGTGTTGAAACTGGTGTGCTCAAGCCTGGTATGGTAGTCACCTTTGGGCCAACTGGACTAACCACTGAAGTTAAGTCTGTTGAAATGCATCACGAGGCTCTGCAAGAGGCCCTTCCTGGTGATAATGTTGGTTTCAACGTGAAGAATGTGGCAGTGAAAGATCTTAAGCGTGGTTTTGTTGCATCCAACTCTAAAGATGATCCAACCAGGGAGGCTGCTAATTTCACGTCCCAGGTCATTATTATGAATCACCCTGGCCAAATTGGAAATGGCTATGCACCAGTTCTTGATTGTCATACCTCTCACATTGCCGTCAAGTTTGCAGAGATTTTGACCAAAATTGACCGGCGATCTGGCAAGGAGCTCGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGAATGGTGAAGATGATTCCCACCAAGCCAATGGTGGTTGAAACATTCTCAGAATACCCACCATTGGGTCGTTTTGCTGTCCGGGACATGCGACAGACTGTTGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAAGACCCAACTGGGGCTAAGGTAACCAAATCTGCCGCAAAGAAGGGAGCCTCCTCAGCCCTCGCGCAGTTGCCCTCGCCCCTCAGGTACTTCAAGTTCACACTCTTAACTTCAGTTCAGGACTTCAATCTTCTCGTTCCGACTTCCGAGTTTCGAGTCCGAATTCAGCCTTCAGAGTTCGAGTGTCTCTCGACTCTCATCTCTCTCTGTTCCTCGGCTGATTGCTCCTACCCAGTACCCTGTTTCGTTTTCGTTCCTCCGTTGAAACAAAGGGACGAATTTGGTTCCCCGGCTGAGTCGGGCAGTTCAGGTTTTCGTTCATTTTTGCTTCGTCTTAGCATCTCCAGGCTCCAGGCAGCAGTCCAGACTACAACTGCCGAGCTCGTTGATCAATATTGGGTAAGTGTTAACTGTCCATTGGAAGTGGAGCTCATGTTGACAGTCTTGCCACATGATGCTTGTGCATTTGGAAACGAAACTGCTATAGTGGTGCATTCTATCTCGGCAACTCTAGACGAGGAGGAGCTTTGTTCATTGTACGAATCCAGTGATGAAGACATGATCAATAGTAGGTTTCAACGACCACCACAAGTAGAATGTTATTTCGTTGATATGTGTCCGGGAAAGAAGTATAGCTCATTGAACCAAATTAGAGAAGAAATCGTGGATCATGCGTTGAAGAATGGGTACGGATTAAAATTCACCCACAGTGACTCTCATAAGTTAAGGACGGCCTACCAGGAAGGATGCACTTGGCAGATGCACGCCTAA 2064 46.8 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPTREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAAKKGASSALAQLPSPLRYFKFTLLTSVQDFNLLVPTSEFRVRIQPSEFECLSTLISLCSSADCSYPVPCFVFVPPLKQRDEFGSPAESGSSGFRSFLLRLSISRLQAAVQTTTAELVDQYWVSVNCPLEVELMLTVLPHDACAFGNETAIVVHSISATLDEEELCSLYESSDEDMINSRFQRPPQVECYFVDMCPGKKYSSLNQIREEIVDHALKNGYGLKFTHSDSHKLRTAYQEGCTWQMHA 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8034008 8040982 + BLOR04132 Blo12g00113 67374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00113 687 PANTHER TRANSLATION FACTOR 1 447 - -
Blo12g00113 687 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Blo12g00113 687 Gene3D Translation factors 229 316 - -
Blo12g00113 687 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Blo12g00113 687 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Blo12g00113 687 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Blo12g00113 687 CDD EF1_alpha_II 230 320 - -
Blo12g00113 687 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 Gene3D Translation factors 323 430 - -
Blo12g00113 687 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Blo12g00113 687 Pfam Elongation factor Tu C-terminal domain 323 429 IPR004160 -
Blo12g00113 687 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Blo12g00113 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Blo12g00113 687 CDD EF1_alpha_III 323 426 - -
Blo12g00113 687 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Blo12g00113 687 CDD EF1_alpha 9 227 - -
Blo12g00113 687 Gene3D - 1 226 IPR027417 -
Blo12g00113 687 SUPERFAMILY Translation proteins 231 321 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01099 Blo-Chr3:37446173 Blo12g00113 Blo-Chr12:8034008 3.74E-33 dispersed
Blo04g00077 Blo-Chr4:664897 Blo12g00113 Blo-Chr12:8034008 0 dispersed
Blo04g00839 Blo-Chr4:9082701 Blo12g00113 Blo-Chr12:8034008 1.17E-16 dispersed
Blo04g01067 Blo-Chr4:15340010 Blo12g00113 Blo-Chr12:8034008 2.98E-48 dispersed
Blo12g00113 Blo-Chr12:8034008 Blo13g01110 Blo-Chr13:33230143 0 dispersed
Blo17g00881 Blo-Chr17:29058051 Blo12g00113 Blo-Chr12:8034008 2.50E-35 dispersed
Blo07g00595 Blo-Chr7:17638935 Blo12g00113 Blo-Chr12:8034008 1.94E-55 transposed
Blo01g00332 Blo-Chr1:4004052 Blo12g00113 Blo-Chr12:8034008 0 wgd
Blo12g00113 Blo-Chr12:8034008 Blo16g00682 Blo-Chr16:26437721 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00113 K03231 - dct:110098184 872.078