Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00125 ATGCATTTTGGCGTGTGTGTGTGTGGCCGCGAAATCGGCAGCAATAGCGTGATGAAGAGAAGGGACAGGGGACTTCGGTTTGACTGGGCAGCTGTTGATTGGTCTGGTTTGCTCGCGGTTCAGTTTGAACCGGCCCATCCTTTGGTTCATCCTCTGGTTCAAGGACGACAAATTGTGTTTCAGTTGCAAGGATTGAACGACGAAGTTTCGGCCGAAAAATCTGGATTACTAGCTGGAATCAAGAGAAGAAGGGCGAGGGCCGTAGCAGAAGGAGAAATTCCTCTCGGATTTCCTGCAGTTTCTGCTGCATTCTTCGACGAGGTGGAGCTTTTCCCAATGGCCGCGTTTTGGAGACGGTTTGCTTGTTTCTGCGTTTCGGTTTTGTTGACCGTCGTTTTCGTTCTGGCAATGGCAAGAGCTCCGAGGAACGACATCCCTGGAGCTAGGACTGCCAAAAAAGAGGAGTTTCAGAGCTCGAGCAACTCGTCAATGGCGACCAAGAAGGAGGCGGTGGTTAGCGACAATGAGAATGCTGTTGATAACCCAGATGAAATTGCTGCCATGGTTGAGATGACCGTGACAGTTGGTATCAGAGCTTGGTTGACTCAAATTGCTTTAACAATGCCGAAAAAGAATTCATCGGAGAAAGAGAACTCATCAATGGACCAACTCGAACGGCTAATCGGGTTGAAAGAGGAGATGAAGTACCTCCAAGAGATACCTGATAAAATTCATTTCCTGGAGGAACGAATGAAGGAAATAGCTGAATTTCCTAATGAGATAGCTGCTGTCCACAACCAGATAGACTCCATCCCAATCCAAGAGCTGATAGATCGAGTAGAGAATCTCGAGTCCCGAAGAGAAAAGGAAAAAGGGGTAGATATTTCAGAGAGTTGCACGAGTGCTATGGTTGGGGTCTTGGAGCCCGTCGAAGAGATCGACCATGCTCATACTCAACTATCAAGCACCCTTACTGTCTTGACGGAAGACTTCAAAGTGATGAGCATCCACAACCGCACCGAAAGAAGGAAGCTGGGTTATTTTTCATGTGGAACTGGAAATCCGATTGATGATTGCTGGCGGTGTGACCCCAACTGGCATCAAAACCGCAAACACCTTGCTGACTGTGGCATTGGCTTTGGAAGAAACGCTGTTGGTGGCCGAAATGGTCGTTTTTATGTTGTCACTGATCATCAAGATGATGACCCTGTCAACCCCAAGCCTGGCACTTTGCGTCATGCTGTAATTCAGGACAAACCTCTCTGGATTGTGTTTCAGCGGGACATGGTGATTCAATTGAAACAAGAGTTGATCGTGAATAGCTTTAAAACCATTGATGGTCGTGGGGTCAACGTCCACATTGCAAATGGAGCTTGTATTACCATCCAGTATGTCACTAATGTTATTATCCACGGCCTGCACATTCATGATTGCAAGCCCACTGGTAATGCCATGGTGAGGAGCTCGCCAAGTCATTACGGGTGGAGGACAATGGCTGATGGTGATGCCATCTCCATTTTCGGGTCGAGCCATATATGGGTTGATCACAATTCGCTCTCTCATTGCGCTGATGGCCTTGTTGATGCTGTGATGGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAATGAGGTGATGCTGTTAGGTCACAGTGACTCGTACACAAAAGACAAGCAAATGCAAGTTACCATTGCTTACAACCATTTTGGTGAAGGACTCATCCAGAGAATGCCAAGGTTGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTACGCGATTGGTGGAAGCGGTAATCCAACCATCAACAGCCAGGGCAACAGATATGCAGCTCCAACAAACCCCTTTGCGAAAGAGGTGACAAAGAGGGTCGAAACAGCCCAAAGTGAGTGGAAGAATTGGAATTGGAGATCACAGGGAGACCTGTTGTTGAATGGTGCATACTTCACTTCATCTGGTGCTGGAGCTTCTTCAAACTATGCCAAGGCCTCAAGCTTGGGAGCTAAGTCTTCTTCCATGGTTGGATCCATAACATCCGGTGCCGGTGCTCTTCCTTGTCGTAGAGGTCGTCAATGTTAG 2112 47.44 MHFGVCVCGREIGSNSVMKRRDRGLRFDWAAVDWSGLLAVQFEPAHPLVHPLVQGRQIVFQLQGLNDEVSAEKSGLLAGIKRRRARAVAEGEIPLGFPAVSAAFFDEVELFPMAAFWRRFACFCVSVLLTVVFVLAMARAPRNDIPGARTAKKEEFQSSSNSSMATKKEAVVSDNENAVDNPDEIAAMVEMTVTVGIRAWLTQIALTMPKKNSSEKENSSMDQLERLIGLKEEMKYLQEIPDKIHFLEERMKEIAEFPNEIAAVHNQIDSIPIQELIDRVENLESRREKEKGVDISESCTSAMVGVLEPVEEIDHAHTQLSSTLTVLTEDFKVMSIHNRTERRKLGYFSCGTGNPIDDCWRCDPNWHQNRKHLADCGIGFGRNAVGGRNGRFYVVTDHQDDDPVNPKPGTLRHAVIQDKPLWIVFQRDMVIQLKQELIVNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRLCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPTNPFAKEVTKRVETAQSEWKNWNWRSQGDLLLNGAYFTSSGAGASSNYAKASSLGAKSSSMVGSITSGAGALPCRRGRQC 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8720829 8738300 + BLOR04144 Blo12g00125 67386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00125 703 SMART amb_all 428 626 IPR002022 -
Blo12g00125 703 PANTHER PECTATE LYASE 18-RELATED 335 700 IPR045032 GO:0030570
Blo12g00125 703 MobiDBLite consensus disorder prediction 153 170 - -
Blo12g00125 703 Coils Coil 273 293 - -
Blo12g00125 703 Pfam Pectate lyase 434 618 IPR002022 -
Blo12g00125 703 SUPERFAMILY Pectin lyase-like 336 698 IPR011050 -
Blo12g00125 703 Gene3D - 353 696 IPR012334 -
Blo12g00125 703 PANTHER PECTATE LYASE 335 700 - -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 376 393 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 581 600 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 645 669 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 500 521 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 674 697 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 603 622 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 436 452 IPR018082 -
Blo12g00125 703 PRINTS Pollen allergen Amb family signature 400 425 IPR018082 -
Blo12g00125 703 MobiDBLite consensus disorder prediction 149 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01002 Blo-Chr1:29378370 Blo12g00125 Blo-Chr12:8720829 2.34E-144 dispersed
Blo07g01064 Blo-Chr7:30485130 Blo12g00125 Blo-Chr12:8720829 0 dispersed
Blo10g00608 Blo-Chr10:18580162 Blo12g00125 Blo-Chr12:8720829 0 dispersed
Blo11g00727 Blo-Chr11:9288708 Blo12g00125 Blo-Chr12:8720829 3.41E-147 dispersed
Blo12g00125 Blo-Chr12:8720829 Blo16g00243 Blo-Chr16:5643367 0 dispersed
Blo12g00487 Blo-Chr12:22639241 Blo12g00125 Blo-Chr12:8720829 0 dispersed
Blo19g00277 Blo-Chr19:16597646 Blo12g00125 Blo-Chr12:8720829 2.33E-43 dispersed
Blo01g00918 Blo-Chr1:20318439 Blo12g00125 Blo-Chr12:8720829 2.31E-43 transposed
Blo02g00696 Blo-Chr2:21029835 Blo12g00125 Blo-Chr12:8720829 0 transposed
Blo05g00691 Blo-Chr5:23269513 Blo12g00125 Blo-Chr12:8720829 3.12E-38 transposed
Blo06g00464 Blo-Chr6:25849124 Blo12g00125 Blo-Chr12:8720829 1.51E-24 transposed
Blo07g00582 Blo-Chr7:17084734 Blo12g00125 Blo-Chr12:8720829 3.28E-41 transposed
Blo10g00663 Blo-Chr10:21065496 Blo12g00125 Blo-Chr12:8720829 1.65E-38 transposed
Blo10g00711 Blo-Chr10:22702524 Blo12g00125 Blo-Chr12:8720829 8.78E-36 transposed
Blo11g00776 Blo-Chr11:11291008 Blo12g00125 Blo-Chr12:8720829 4.36E-69 transposed
Blo12g01068 Blo-Chr12:28435843 Blo12g00125 Blo-Chr12:8720829 1.17E-34 transposed
Blo16g00326 Blo-Chr16:8417286 Blo12g00125 Blo-Chr12:8720829 4.56E-48 transposed
Blo18g00649 Blo-Chr18:11902341 Blo12g00125 Blo-Chr12:8720829 5.53E-38 transposed
Blo13g00089 Blo-Chr13:1548769 Blo12g00125 Blo-Chr12:8720829 2.07E-98 transposed
Blo01g00317 Blo-Chr1:3884213 Blo12g00125 Blo-Chr12:8720829 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00125 K01728 - qsu:112029642 718.768