Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00130 ATGAGCTACTCCTACAACTTCAAGGTCCCCAGCAAAGCACGCAGCAAAATTCTCCACAAGCGTCGCCAGGAGATTTCAAGCCAGATGTTGTGGATTAACCAAACAAGGAAGAAAGTAGCAACAGCAGAGAAAGGCAATGGAATTGGGAGAAAGTGTCAACATTGTGGAGCCGAAAAAACTCCGCAATGGCGGGCCGGCCCTCTTGGGCCAAAAACTCTCTGCAACGCCTGCGGGGTGAGGTTCAAGTCAGGTCGGCTCGTGCCCGAGTATCGTCCAGCGAGTAGTCCCACTTTCTCGAATGATTTGCACTCGAATTCGCACAGGAAGGTAATGGAGATGAGGAGGAAGCAGGAGAAGGCAAGTTTGATGAATTCTGTAGATAAAGGATAG 390 50.0 MSYSYNFKVPSKARSKILHKRRQEISSQMLWINQTRKKVATAEKGNGIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFSNDLHSNSHRKVMEMRRKQEKASLMNSVDKG 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9079273 9079662 - BLOR04149 Blo12g00130 67391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00130 129 PANTHER GATA TRANSCRIPTION FACTOR 4 119 - -
Blo12g00130 129 PANTHER GATA TRANSCRIPTION FACTOR 9 4 119 - -
Blo12g00130 129 SMART GATA_3 46 96 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 110 - -
Blo12g00130 129 ProSitePatterns GATA-type zinc finger domain. 52 77 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 ProSiteProfiles GATA-type zinc finger domain profile. 46 82 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 CDD ZnF_GATA 51 100 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 Pfam GATA zinc finger 52 85 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 Gene3D - 46 97 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00130 - - - cmo:103499483 171.014
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00130 Blo-Chr12:9079273 Blo16g00063 Blo-Chr16:1975158 2.27E-36 dispersed
Blo01g00314 Blo-Chr1:3843136 Blo12g00130 Blo-Chr12:9079273 3.29E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo12g00130 . 1 118 C2C2-Gata Transcription Factor Family AT3G24050 59.7 1.5e-37 153.7
Blo01g01777 . 78 328 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.4e-65 245.4
Blo16g00063 BCT 81 422 C2C2-Gata Transcription Factor Family AT5G66320 50.6 7.7e-73 271.2
Blo19g00240 . 20 358 C2C2-Gata Transcription Factor Family AT4G17570 55.7 2.3e-89 326.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008616 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12967 PF00320 GATA 2.90E-17 CL0167 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00130 Blo_Chr12 FPKM 10.670501 10.067754 5.548026 7.086039 5.80363 6.128242 6.701146 7.451092 6.819148 7.118757