Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo12g00130 | ATGAGCTACTCCTACAACTTCAAGGTCCCCAGCAAAGCACGCAGCAAAATTCTCCACAAGCGTCGCCAGGAGATTTCAAGCCAGATGTTGTGGATTAACCAAACAAGGAAGAAAGTAGCAACAGCAGAGAAAGGCAATGGAATTGGGAGAAAGTGTCAACATTGTGGAGCCGAAAAAACTCCGCAATGGCGGGCCGGCCCTCTTGGGCCAAAAACTCTCTGCAACGCCTGCGGGGTGAGGTTCAAGTCAGGTCGGCTCGTGCCCGAGTATCGTCCAGCGAGTAGTCCCACTTTCTCGAATGATTTGCACTCGAATTCGCACAGGAAGGTAATGGAGATGAGGAGGAAGCAGGAGAAGGCAAGTTTGATGAATTCTGTAGATAAAGGATAG | 390 | 50.0 | MSYSYNFKVPSKARSKILHKRRQEISSQMLWINQTRKKVATAEKGNGIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFSNDLHSNSHRKVMEMRRKQEKASLMNSVDKG | 129 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9079273 | 9079662 | - | BLOR04149 | Blo12g00130 | 67391 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo12g00130 | 129 | PANTHER | GATA TRANSCRIPTION FACTOR | 4 | 119 | - | - | |
Blo12g00130 | 129 | PANTHER | GATA TRANSCRIPTION FACTOR 9 | 4 | 119 | - | - | |
Blo12g00130 | 129 | SMART | GATA_3 | 46 | 96 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00130 | 129 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 47 | 110 | - | - | |
Blo12g00130 | 129 | ProSitePatterns | GATA-type zinc finger domain. | 52 | 77 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00130 | 129 | ProSiteProfiles | GATA-type zinc finger domain profile. | 46 | 82 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00130 | 129 | CDD | ZnF_GATA | 51 | 100 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00130 | 129 | Pfam | GATA zinc finger | 52 | 85 | IPR000679 | GO:0006355|GO:0043565 | |
Blo12g00130 | 129 | Gene3D | - | 46 | 97 | IPR013088 | GO:0006355|GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo12g00130 | Blo-Chr12:9079273 | Blo16g00063 | Blo-Chr16:1975158 | 2.27E-36 | dispersed | |
Blo01g00314 | Blo-Chr1:3843136 | Blo12g00130 | Blo-Chr12:9079273 | 3.29E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
12967 | PF00320 | GATA | 2.90E-17 | CL0167 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo12g00130 | - | - | cmo:103499483 | 171.014 |