Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00130 ATGAGCTACTCCTACAACTTCAAGGTCCCCAGCAAAGCACGCAGCAAAATTCTCCACAAGCGTCGCCAGGAGATTTCAAGCCAGATGTTGTGGATTAACCAAACAAGGAAGAAAGTAGCAACAGCAGAGAAAGGCAATGGAATTGGGAGAAAGTGTCAACATTGTGGAGCCGAAAAAACTCCGCAATGGCGGGCCGGCCCTCTTGGGCCAAAAACTCTCTGCAACGCCTGCGGGGTGAGGTTCAAGTCAGGTCGGCTCGTGCCCGAGTATCGTCCAGCGAGTAGTCCCACTTTCTCGAATGATTTGCACTCGAATTCGCACAGGAAGGTAATGGAGATGAGGAGGAAGCAGGAGAAGGCAAGTTTGATGAATTCTGTAGATAAAGGATAG 390 50.0 MSYSYNFKVPSKARSKILHKRRQEISSQMLWINQTRKKVATAEKGNGIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFSNDLHSNSHRKVMEMRRKQEKASLMNSVDKG 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9079273 9079662 - BLOR04149 Blo12g00130 67391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00130 129 PANTHER GATA TRANSCRIPTION FACTOR 4 119 - -
Blo12g00130 129 PANTHER GATA TRANSCRIPTION FACTOR 9 4 119 - -
Blo12g00130 129 SMART GATA_3 46 96 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 110 - -
Blo12g00130 129 ProSitePatterns GATA-type zinc finger domain. 52 77 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 ProSiteProfiles GATA-type zinc finger domain profile. 46 82 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 CDD ZnF_GATA 51 100 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 Pfam GATA zinc finger 52 85 IPR000679 GO:0006355|GO:0043565
Blo12g00130 129 Gene3D - 46 97 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00130 Blo-Chr12:9079273 Blo16g00063 Blo-Chr16:1975158 2.27E-36 dispersed
Blo01g00314 Blo-Chr1:3843136 Blo12g00130 Blo-Chr12:9079273 3.29E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12967 PF00320 GATA 2.90E-17 CL0167 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00130 - - cmo:103499483 171.014