Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00131 ATGATTCTTCTTAAATGTGTCATCTTTTGCACAGATCTAGATTCGCTGCCTAATATTCTGCAAAAGAAATATTCTTTGTTACGTGATCTGGATAAAAGTTTGCAAGGACTTATAAAACAAAATGAGCAACGATGTGAGCAAGAAATAGAGGACATCAAGCGGGGTGTTAAATCTGGCATTAGTTCCTCTAATGCATCACCTCTTCGATTCTCTGATGAAGTGCTTGATGAACAAAAGCATAGCATTAGAATTGCTGATGAAAAGGTTGCTCTAGCTGTTCAAGCTTATGATTTGGTAGATACCCACATCCAGCAGCTTGATCAATATTTGAAAAAAATTGATGAAGAGCTACGGCGAGAAAGAGATGCTGTTAGTGGATTGCCAACTTCAAGTATTGACGGCAGCATAAAATCTGGCAAGGGTAATGAGAGTGGCAGGGGAGGGCGTAAAAAAACACGGCAAGCAACAGCAGCGGCAGTGGCAGCAATTTCAGCGGCTACAGAAGTAGCAATACAAGCTGTTAACAATCCAATCGGAACAGAACTGGATTTGCCACTCGATCCAAATGAGCCTACATACTGTTTCTGTAACCAAGTCAGCTTCGGTGAAATGGTAGCTTGCGACAACCCTGATTGCAAGATAGAGTGGTTCCATTTCGGGTGCGTTGGTTTGAAAGAGCAGCCGAAGGGGAAATGGTTCTGTTCCTGCTGTGCTGTCGCAAAAGGTCGGCGGAAAGCTAGC 741 43.18 MILLKCVIFCTDLDSLPNILQKKYSLLRDLDKSLQGLIKQNEQRCEQEIEDIKRGVKSGISSSNASPLRFSDEVLDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKKIDEELRRERDAVSGLPTSSIDGSIKSGKGNESGRGGRKKTRQATAAAVAAISAATEVAIQAVNNPIGTELDLPLDPNEPTYCFCNQVSFGEMVACDNPDCKIEWFHFGCVGLKEQPKGKWFCSCCAVAKGRRKAS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9244751 9247467 + BLOR04150 Blo12g00131 67392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00131 247 ProSitePatterns Zinc finger PHD-type signature. 194 237 IPR019786 -
Blo12g00131 247 Gene3D - 8 111 - -
Blo12g00131 247 ProSiteProfiles Zinc finger PHD-type profile. 191 240 IPR019787 -
Blo12g00131 247 PANTHER INHIBITOR OF GROWTH PROTEIN 12 159 IPR028651 -
Blo12g00131 247 PANTHER INHIBITOR OF GROWTH PROTEIN 150 239 IPR028651 -
Blo12g00131 247 MobiDBLite consensus disorder prediction 122 152 - -
Blo12g00131 247 SMART PHD_3 193 238 IPR001965 -
Blo12g00131 247 CDD PHD_Yng1p_like 193 239 - -
Blo12g00131 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 240 IPR013083 -
Blo12g00131 247 PANTHER INHIBITOR OF GROWTH PROTEIN 4 12 159 - -
Blo12g00131 247 PANTHER INHIBITOR OF GROWTH PROTEIN 4 150 239 - -
Blo12g00131 247 SMART ING_2 9 113 IPR024610 -
Blo12g00131 247 SUPERFAMILY FYVE/PHD zinc finger 182 240 IPR011011 -
Blo12g00131 247 Coils Coil 99 123 - -
Blo12g00131 247 CDD ING_plant 15 110 - -
Blo12g00131 247 Pfam Inhibitor of growth proteins N-terminal histone-binding 11 112 IPR024610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00131 K11346 ING4; inhibitor of growth protein 4 - tcc:18602825 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00131 Blo-Chr12:9244751 Blo12g00359 Blo-Chr12:19751886 2.08E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00131 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0