Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00141 ATGGCTTCTTCAACCCTAGCTCGAGCTATGGCGACCGTCATTACCTTGGCCCGCCACCCGTCTTCATCTCTTTTCTTTCCCAATCGCCTTCTCTCGTCTTCAGCTACTGTTACTCAATGCCCTTCTATACCTACTCTTATTCTTGGCCGCCGGTCTCTTGCTCCTCTCTCTCATGCCCTCCGATCTATCACTCCCTCTCACACTACCCGGTTCGTTCCAGTGCGATGCCGCGTCAATCGATCCGGGAACTCGGCGTACTCGCCGCTCAACTCTGGTTCCAATTTTAGCGATCGTCCTCCTACGGAAATGGCTCCGTTGTTCCCTGGTTGTGACTACGAACACTGGCTCATCGTTATGGATAAACCTGGTGGCGAGGGTGCTACCAAGCAGCAGATGATCGATTGCTACATTCAAACTCTGGCTAAAGTTGTCGGGAGTGAAGAGGAAGCGAAGAAGAAAATATACAATGTTTCTTGCGAGCGATATTTTGGTTTTGGATGTGAGATTGATGAGGAGACCTCGAATAAGCTGGAAGGGTTGCCTGGAGTTCTGTTTGTACTTCCTGATTCATATGTTGATGCTGAGTATAAGGACTATGGAGCTGAGTTATTCGTGAATGGTGAGATTGTTCAGAGGTCACCGGAGAGACAGAGGAGGGTGGAGCCACAACCCCAAAGGGCTCAGGACAGACCTCGGTACAATGATAGAACTCGATATGTGCGGCGGCGAGAGAACATGAGGATATTAAAGCGGAAGGAGAGAGAGGGTTCATTGCATCCGGTCAAGCCGTCGGCTGCGGAAGTGGCTGAGCCGGTCTCGTCGAATCGGCTGCTAGCCGGGTACATGGCTTTCGAGTTTCTGACAAAGGGAACGCTGTTTGGAGAAAGGTTTGATCCGGCTGGGGTGGAGGCTGTGCCGCCGGCGCTGGCTAAACCTTCTGCCGAGTCGAAGAAGATGAAGCCGGAAGCTGAGGCAAGCTTGAAGATGGAGCCTGGAAATTATGCTGAGGTGGCGACCATTCTTAAGACTGATGGCGCCCACATTCCTGGCATAGTCAACCCCGCCCAACTCGCTCGCTGGATTCAAATGTGA 1092 52.11 MASSTLARAMATVITLARHPSSSLFFPNRLLSSSATVTQCPSIPTLILGRRSLAPLSHALRSITPSHTTRFVPVRCRVNRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDAEYKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRYVRRRENMRILKRKEREGSLHPVKPSAAEVAEPVSSNRLLAGYMAFEFLTKGTLFGERFDPAGVEAVPPALAKPSAESKKMKPEAEASLKMEPGNYAEVATILKTDGAHIPGIVNPAQLARWIQM 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9913032 9916515 + BLOR04160 Blo12g00141 67402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00141 363 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 50 247 IPR039206 GO:0016554
Blo12g00141 363 MobiDBLite consensus disorder prediction 213 232 - -
Blo12g00141 363 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 110 193 IPR037045 -
Blo12g00141 363 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 50 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00141 - - - gra:105796753 380.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00063 Blo12g00141 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00601 Blo-Chr3:23990195 Blo12g00141 Blo-Chr12:9913032 2.68E-30 dispersed
Blo03g01431 Blo-Chr3:40894324 Blo12g00141 Blo-Chr12:9913032 2.72E-28 dispersed
Blo05g00276 Blo-Chr5:3014399 Blo12g00141 Blo-Chr12:9913032 2.93E-07 dispersed
Blo06g00518 Blo-Chr6:27333943 Blo12g00141 Blo-Chr12:9913032 1.32E-19 dispersed
Blo07g00964 Blo-Chr7:29008751 Blo12g00141 Blo-Chr12:9913032 1.08E-44 dispersed
Blo10g00738 Blo-Chr10:23068630 Blo12g00141 Blo-Chr12:9913032 9.57E-43 dispersed
Blo12g00141 Blo-Chr12:9913032 Blo13g00083 Blo-Chr13:1299725 2.33E-17 dispersed
Blo01g00297 Blo-Chr1:3689233 Blo12g00141 Blo-Chr12:9913032 8.34E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g148 Blo01g00063 Blo12g00141 . . . . . Bma05g01026 . Cmo17g00331 . . . . . . . . . . . . . . Cla06g00461 Cam06g0492 Cec06g0495 Cco06g0494 Clacu06g0478 Cmu06g0479 Cre06g1252 . . Cone7ag0130 Cone4ag0135 . Csa06g01786 Chy11g01532 . . . . . Bpe05g00826 . . . Sed02g1424 . . Cma08g01241 Cma17g00344 . Car17g00313 Cpe12g00292 . Bhi12g02035 Tan06g2704 Cmetu06g1492 . . . Lcy12g0760 . . . . . . . Lsi09g01453 . . Cme11g02035
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00141 Blo_Chr12 FPKM 74.896057 80.314873 77.695381 82.647842 66.597092 67.368111 65.59024 86.396652 85.546738 86.012291