Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00158 ATGGTTCCTCTCTCTACACTCGTTTTCTTTCTGTTCACTCTCCTCTCCGGCACCGCTGCCGACGACGCCGCCGTGATGGCAAAGTTGGCGGCGGCTCTCTCCCCCACACCAAGCAGCTGGAACTCGACGGCCAACAACGCCTTCTGCGACTGGAACGGCGTTTCTTGCATCTCCTTTCGCGTGACCTCCATTTATTTAGCTTCAATGTCTCTCTCCGGCACTCTTCCTTCCGATATCAATTCCCTCTCTCAGCTCTCCTCCCTCTCTCTCCAACGCAATTTTCTTTCTGGTGCCTTACCCTCTTTCGCCAACCTCTCCTTCCTCCAAAGTGTCTTCCTCGATTACAACAATTTTACCTCTATCCCTACCGATTTTGTCAGTGGACTTACCAGCTTGCAGACCTTGAGCTTGAGTCAAAATATAAATCTCGAACCGTGGTCCATTCCGACTGAATTAACGCAGTCGTCTAGTTTGGTCAGTTTTTCTGCTGCAAACGCGAATATTGTTGGATCTTTGCCTGATTTCTTCGATTCGTTTCCGAGCTTACAGAATCTTCGTCTTTCCTACAATAATCTTACTGGCTCTTTGCCTCCTTCTTTGGGAAAATCGGGAATTCAGAATCTGTGGCTCAACAATCAAGAACTCGGATTATCGGGAAGCATCGAGGTTTTGTCCACCATGACTGAGTTATACCAAGCGTGGCTCCATGAAAATCAGTTCACCGGACAAATTCCTGACCTTTCACAATGCCAGAATTTGTTTGATCTTCAGCTCCGCGACAACATATTTACCGGCATTGTGCCTGCGTCTCTGATGGAGCTCCCGAATTTGAAGAACGTTTCGTTGGATAACAATAGGCTGCAAGGGCCTCTGCCGGTGTTTGATTCCAAAACCATTGTAACCTTAGGTGGTATTGACAGATTTTGCAGAACCACACCTGGGGATTGTGATCCTCAAGTTACCATTTTGCTCTCTGTTGCAGAGGCTTTCGGCTATCCCTTTTCTCTGGCCGATTCTTGGCAAGAGAACGATGCTTGTCAAAGTTGGCGCTTCGTTCAATGTTCAAATGAAGATATCATCGAATTAAATTTTGCGAAACAGGGCTTTAGCGGTACGATCTCCACGGCATTCGCAAACTTAACTTCACTGCAGAGTTTGTTACTAAACGATAACAATCTCACGGGTCCCATACCCGATAGCTTGACAACGTTGACTCAGCTTAAATTTCTTGACGTTTCTAACAACAATCTTAGTGGCCCGATTCCAAAATTTGCAGCGACGGTGAAGCTAACTACAAGCGGAAATAGTTTACTAGGGACAACTTTGAGCCCTGGAAGTGGAGGAAATGAGGGGAACGGAGGGGATTCACCTGGCACAGATGCTACCTCCTCAAATGGAGTTTCATCTGGATCTTCGAAAAATCGAGTTTCACCAGGTATAATCGCAGGCGTAGTTAGCGCTGTTGTATTATTTGTTGTGGTCTTGTTGTTCGTGATGTTCAAATTTTACGCAAATAGCAAACGGAAAAAAGAAAAGATTAGTAATTCCATTAATGGTGGGAAAGCAATTAAGAGCCATGTAGGCAGTAGTGTTATTGGCTATTCTGGCTTACCGAGTGAAATACAAAGCCAGAGCAGCAGTGAGAAGAGCAACTTCAATGTATCCGAGGGTGGGAATGTTGCAATCTCGATCCAAGTTTTGCGGCAAGTGACGAACAATTTCAACGATGATAATGTTCTGGGTAGAGGCGGATTTGGAGTTGTCTATAAAGGAGAATTACATGACGGGACCAACATAGCTGTGAAGAGAATGCAATCTGTGGCAATGGGGACCAAAGGATTGAAAGAATTCGAGGCAGAAATTGCAGTTCTTACAAAAGTCAGACACAGGCATTTAGTGGCTCTTCTTGGTTACTGCATCAATGGAGATGAAAGGCTATTAGTATATGAATATATGCCTCAGGGAACTTTAACACAACACTTGTTCGATTGGCGGGAGTGTAAACTTTCTCCCCTTACATGGAAACAGAGAGTTACAATTGCATTGGATGTGGCTAGGGGAGTGGAATATCTGCACAGTTTAGCTCAGCAGAGTTTCATTCACAGAGATTTAAAACCTTCGAATGTGCTTCTTGGTGATGACATGAGGGCAAAGGTTGCGGATTTTGGTTTGGTAAGAAACGCACCAGACGGGGGTAAATACTCTGTTGAAACTCGTCTGGCCGGGACATTTGGGTATCTTGCTCCTGAATATGCAGCTACTGGAAGAGTTACGACAAAAGTCGATGTTTACGCGTTTGGGGTAGTTTTAATGGAACTAATGACTGGCCGAAGAGCTCTAGACGATGCGATGCCTGACGAGACGTCCCATTTGGTCACATGGTTCCGAAGAGTTCTCATCAACAAGGAGAACATTCCAAAGGCCATTGATCAAGCTCTTGACCCTGATGAAGAAACGATGGAAAGTATAAAGAAGGTGGCCGAACTTGCAGGATATTGCACGGCTCGTGAGCCGTACCAGAGACCAGACATGGGGCATGCAGTGAGCATATTGAGCCCTCTGGTGGAGCAGTGGAAACCATCTTTCCAAGAAGCGGAAGAGTCTTATGGGATTGACTTGAACCTGAGCCTTCCTCAAACGCTTAGAAAATGGCAGGCCAGTGAAGGGTCTTCTTCCACAACATTTGTTAATGATGCGTCTTATTCCAACAGCCACTCGAGCATTCCCTCGAAACCGGCTGGATTTGCAGACTCCTTTGGCTCCTCTGATTGCAGGTGA 2778 45.86 MVPLSTLVFFLFTLLSGTAADDAAVMAKLAAALSPTPSSWNSTANNAFCDWNGVSCISFRVTSIYLASMSLSGTLPSDINSLSQLSSLSLQRNFLSGALPSFANLSFLQSVFLDYNNFTSIPTDFVSGLTSLQTLSLSQNINLEPWSIPTELTQSSSLVSFSAANANIVGSLPDFFDSFPSLQNLRLSYNNLTGSLPPSLGKSGIQNLWLNNQELGLSGSIEVLSTMTELYQAWLHENQFTGQIPDLSQCQNLFDLQLRDNIFTGIVPASLMELPNLKNVSLDNNRLQGPLPVFDSKTIVTLGGIDRFCRTTPGDCDPQVTILLSVAEAFGYPFSLADSWQENDACQSWRFVQCSNEDIIELNFAKQGFSGTISTAFANLTSLQSLLLNDNNLTGPIPDSLTTLTQLKFLDVSNNNLSGPIPKFAATVKLTTSGNSLLGTTLSPGSGGNEGNGGDSPGTDATSSNGVSSGSSKNRVSPGIIAGVVSAVVLFVVVLLFVMFKFYANSKRKKEKISNSINGGKAIKSHVGSSVIGYSGLPSEIQSQSSSEKSNFNVSEGGNVAISIQVLRQVTNNFNDDNVLGRGGFGVVYKGELHDGTNIAVKRMQSVAMGTKGLKEFEAEIAVLTKVRHRHLVALLGYCINGDERLLVYEYMPQGTLTQHLFDWRECKLSPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNVLLGDDMRAKVADFGLVRNAPDGGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELMTGRRALDDAMPDETSHLVTWFRRVLINKENIPKAIDQALDPDEETMESIKKVAELAGYCTAREPYQRPDMGHAVSILSPLVEQWKPSFQEAEESYGIDLNLSLPQTLRKWQASEGSSSTTFVNDASYSNSHSSIPSKPAGFADSFGSSDCR 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10635191 10638373 + BLOR04177 Blo12g00158 67419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00158 925 MobiDBLite consensus disorder prediction 892 925 - -
Blo12g00158 925 Gene3D Phosphorylase Kinase; domain 1 537 651 - -
Blo12g00158 925 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 6 925 - -
Blo12g00158 925 SUPERFAMILY L domain-like 49 432 - -
Blo12g00158 925 Gene3D Transferase(Phosphotransferase) domain 1 652 875 - -
Blo12g00158 925 Pfam Protein tyrosine and serine/threonine kinase 578 848 IPR001245 GO:0004672|GO:0006468
Blo12g00158 925 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Blo12g00158 925 SMART serkin_6 574 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00158 925 PANTHER OSJNBA0070M12.3 PROTEIN 6 925 - -
Blo12g00158 925 Pfam Leucine rich repeat N-terminal domain 20 56 IPR013210 -
Blo12g00158 925 Pfam Leucine rich repeat N-terminal domain 317 355 IPR013210 -
Blo12g00158 925 Gene3D Ribonuclease Inhibitor 20 308 IPR032675 -
Blo12g00158 925 SUPERFAMILY Protein kinase-like (PK-like) 563 873 IPR011009 -
Blo12g00158 925 ProSiteProfiles Protein kinase domain profile. 574 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00158 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Blo12g00158 925 MobiDBLite consensus disorder prediction 892 911 - -
Blo12g00158 925 Gene3D Ribonuclease Inhibitor 318 441 IPR032675 -
Blo12g00158 925 SMART LRR_typ_2 129 155 IPR003591 -
Blo12g00158 925 SMART LRR_typ_2 380 404 IPR003591 -
Blo12g00158 925 SMART LRR_typ_2 179 203 IPR003591 -
Blo12g00158 925 SMART LRR_typ_2 105 128 IPR003591 -
Blo12g00158 925 SMART LRR_typ_2 82 104 IPR003591 -
Blo12g00158 925 SMART LRR_typ_2 274 296 IPR003591 -
Blo12g00158 925 MobiDBLite consensus disorder prediction 439 475 - -
Blo12g00158 925 CDD STKc_IRAK 580 854 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00158 - - - csv:101213513 1211.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00197 Blo12g00158 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00158 Blo-Chr12:10635191 Blo17g00472 Blo-Chr17:6651320 3.00E-39 dispersed
Blo12g00158 Blo-Chr12:10635191 Blo07g00064 Blo-Chr7:908102 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004008 3 1 2 2 2 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84563 PF07714 PK_Tyr_Ser-Thr 3.30E-48 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00158 Blo_Chr12 FPKM 11.257077 8.866623 8.113807 8.303898 13.566824 11.705694 12.929679 7.599868 8.074883 8.394592