Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00161 ATGGCTACGGATGCTGCAGTGGTTGAGGGAAAGTTGAAAGCTTGCTGCAAAAGAGGGCCTGGTTATGCCTCCCCTCTGGAAGCGATGTCTGGTCCAAGAGAGGGTCTGATCTATGTCACTGCAGTTTACTCAGCAGGAACAGGGAGAAATAAGCCTGATTACTTGGCCACAGTGGATATAGATCCTAATTCTCCTACTTACTCAAAAGTTATACATCGATTGCCCATGCCATATCTGGGCGACGAACTACATCATTCTGGGTGGAATTCGTGCAGCTCCTGTCATGGAGACCCTTCGGCAGCTCGGCGATTTCTACTCCTCCCTGCCCTCTTATCTGGTCGAATATATGCGATCGACATAGGGAGTAATCCAAAGGCACCATCGCTGCACAAAGTCGTCGAACCGAAGGACATCATACAAAAGACTGGATTGGCTTATCCACATACGTCCCATTGCCTTGCTTCTGGTGAAATTATGGTGTCATGTCTTGGAGATAAAGATGGAAATGCTGAAGGAAATGGGTTCCTTCTTCTCGATTCGGAGTTTAATGTTAAAGGAAGATGGGAAAAACCAGGACATAGTCCCCTGTTTGGATACGATTTCTGGTACCAACCAAGACATAAAACAATGATAAGTACATCATGGGGGGCTCCCTCTGCTTTCACCGGGGGATTCAACCTCCAACATGTTTCAGATGGTCTCTACGGGAGGCATCTCTATGTCTACAGCTGGCCCGGTGGTGAAATCAAACAAACTTTGGACCTTGGCAGCACTGGTCTCCTACCACTCGAGATAAGGTTTTTGCATGATCCTTCAAAAGATATCGGTTTTGTTGGAGCCGCTTTGTCAAGCAATATGGTGCGATTTTTCAAGACGGAAGATGATTCATGGAGCCATGAGGTTGTGATATCAGTGAAGCCTTTGAAGGTCCAAAATTGGATTCTTCCTGAGATGCCCGGCCTGATTACGGATTTTCTTATCTCGCTCGATGATCGCTTTCTGTACTTTGTTAACTGGCTTCATGGAGATGTCAGACAATATAACATTGAGGACCCAAAGAATCCTAAGTTGACTGGCCAAATCTGGGTTGGAGGACTCATGCAAAAGGGAAGCACGGTAGAGGTGGTGGGCGAAGATGGTAAAAGCTTTCAGTTCCAAGTTCCAGAGGTTCAGGGAAAACGTTTGAGAGGGGGACCTCAAATGATACAATTAAGCTTGGATGGAAAAAGACTGTACGTCACAAACTCTCTCTTCAGCGCTTGGGACCGTCAGTTTTACCCCGATCTGATCGAGAAAGGGTCCCACATGCTGCAGATCGACGTCGATGCAGAGAAGGGAGGCCTCTCCATCAACCCGAATTTTTTCGTTGACTTTGGAGCTGAGCCTGATGGTCCTTCCCTGGCGCATGAGATGCGATATCCTGGAGGGGACTGCACTTCCGATATATGGATTTAG 1455 47.29 MATDAAVVEGKLKACCKRGPGYASPLEAMSGPREGLIYVTAVYSAGTGRNKPDYLATVDIDPNSPTYSKVIHRLPMPYLGDELHHSGWNSCSSCHGDPSAARRFLLLPALLSGRIYAIDIGSNPKAPSLHKVVEPKDIIQKTGLAYPHTSHCLASGEIMVSCLGDKDGNAEGNGFLLLDSEFNVKGRWEKPGHSPLFGYDFWYQPRHKTMISTSWGAPSAFTGGFNLQHVSDGLYGRHLYVYSWPGGEIKQTLDLGSTGLLPLEIRFLHDPSKDIGFVGAALSSNMVRFFKTEDDSWSHEVVISVKPLKVQNWILPEMPGLITDFLISLDDRFLYFVNWLHGDVRQYNIEDPKNPKLTGQIWVGGLMQKGSTVEVVGEDGKSFQFQVPEVQGKRLRGGPQMIQLSLDGKRLYVTNSLFSAWDRQFYPDLIEKGSHMLQIDVDAEKGGLSINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10706585 10709586 + BLOR04180 Blo12g00161 67422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00161 484 Pfam 56kDa selenium binding protein (SBP56) 16 484 IPR008826 GO:0008430
Blo12g00161 484 PANTHER METHANETHIOL OXIDASE 5 484 IPR008826 GO:0008430
Blo12g00161 484 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 53 416 - -
Blo12g00161 484 PANTHER SELENIUM-BINDING PROTEIN 1 5 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00161 K17285 SELENBP1; methanethiol oxidase [EC:1.8.3.4] - qsu:112004189 878.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00741 Blo12g00161 CCT
Blo07g00259 Blo12g00161 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g700 . Blo12g00161 . . Bpe04g00796 Bpe14g01250 . . . Cmo17g00165 Cma06g01328 Cma14g01810 . . . . Cpe03g01515 . . . . . . . Cla06g00662 Cam06g0711 Cec06g0715 Cco06g0725 Clacu06g0701 Cmu06g0688 Cre06g1458 Cone14ag0148 . . Cone4ag0326 Lsi05g01727 . . Cme06g00498 Blo02g00741 Blo07g00259 Bda11g00628 Bda13g00067 . Bpe13g00560 Bma02g00789 Bma06g01597 . Cmo06g01332 Cmo14g01847 . Cma17g00166 . . Cpe12g00143 . . . . . . . . Cla05g00449 Cam05g0490 Cec05g0499 Cco05g0498 Clacu05g0485 Cmu05g0462 Cre05g0525 Lsi09g01236 Csa03g01215 Chy06g00477 Cme05g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007726 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00161 Blo_Chr12 FPKM 1.949871 1.734551 2.109672 2.160535 2.703317 2.106714 2.433537 3.114976 2.998629 3.059238