Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00165 ATGTCTGTCTCATCGACTGCCTTTTCTCCGGACCACCTCTCTCCGTTAGACCAGCTCTGCTACGTTCATTGCAACTTCTGCGACACTGTCCTCGCGGTGAGTGTTCCTTGCAGTATCTTGTCCAAGACTGTTACTGTTCGATGCGGTCACTGCACCAATCTTCTGTCGGTGAACATGCGGGGCCTTCTTCTTCCTGCTTCTAACCAGCTTCATCAGCTTGGACATTCTTTCTTCTCCCCTCAAACTCTTCTGGACGAGATGAGAAATCTGCCCTCAAATGTGATGTTGAATCTGCCAAAGCCGGCTGATCAGCAGGCTATGCCAACTAGGGGCGCTGAAGAACTTCCGAGACCTCCAGTTGTTAACAGACCTCCAGAGAAGAGACAAAGAGTCCCATCTGCCTACAATCGCTTCATCAAGGACGAGATCCAACGAATCAAAGCTCGAAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCTGCTGCAAAGAACTGGGCCCACTTCCCACACATTCACTTCGGACTTATCCCTGATCAACACGTGAAGAAACCAAACATATGCCAGCAGGGTTTTCTCTGTGGAGAAGGAAAGCTTCTTTACTGTAAAGGAAAGTTGGGGAAAGATCTCCGCTTCCCTCTACTTTAA 648 48.92 MSVSSTAFSPDHLSPLDQLCYVHCNFCDTVLAVSVPCSILSKTVTVRCGHCTNLLSVNMRGLLLPASNQLHQLGHSFFSPQTLLDEMRNLPSNVMLNLPKPADQQAMPTRGAEELPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGLIPDQHVKKPNICQQGFLCGEGKLLYCKGKLGKDLRFPLL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10789311 10791353 + BLOR04184 Blo12g00165 67426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00165 215 PANTHER PROTEIN YABBY 4 1 190 - -
Blo12g00165 215 Pfam YABBY protein 16 176 IPR006780 GO:0007275
Blo12g00165 215 Gene3D High mobility group box domain 119 171 IPR036910 -
Blo12g00165 215 SUPERFAMILY HMG-box 120 169 IPR036910 -
Blo12g00165 215 PANTHER PROTEIN YABBY 6-RELATED 1 190 IPR006780 GO:0007275
Blo12g00165 215 MobiDBLite consensus disorder prediction 99 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00165 K25796 YAB; plant-specific transcription factor YABBY family protein - sind:105171079 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01054 Blo-Chr2:40693906 Blo12g00165 Blo-Chr12:10789311 3.87E-79 dispersed
Blo03g00407 Blo-Chr3:11414194 Blo12g00165 Blo-Chr12:10789311 1.92E-82 dispersed
Blo12g00165 Blo-Chr12:10789311 Blo14g00771 Blo-Chr14:23660301 2.33E-53 dispersed
Blo01g00279 Blo-Chr1:3523615 Blo12g00165 Blo-Chr12:10789311 3.62E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g01078 . 2 177 C2C2-YABBY Transcription Factor Family AT1G69180 53.6 1.1e-44 176.8
Blo01g00279 . 59 213 C2C2-YABBY Transcription Factor Family AT2G45190 63.5 4.5e-50 194.5
Blo12g00165 . 59 190 C2C2-YABBY Transcription Factor Family AT2G45190 65.7 4.5e-42 167.9
Blo02g01054 CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 6.5e-41 164.1
Blo03g00407 CCT 66 220 C2C2-YABBY Transcription Factor Family AT2G45190 56.0 1.9e-40 162.5
Blo02g01054 CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 7.0e-44 174.1
Blo14g00771 . 11 169 C2C2-YABBY Transcription Factor Family AT1G08465 57.9 2.2e-42 169.1
Blo03g00407 CCT 23 197 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 2.9e-42 168.7
Blo01g00625 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 3.8e-42 168.3
Blo12g00165 . 17 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.0 8.0e-40 160.6
Blo01g00279 . 17 190 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 1.8e-39 159.5
Blo01g00279 . 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 8.2e-49 190.7
Blo03g00407 CCT 33 219 C2C2-YABBY Transcription Factor Family AT4G00180 53.4 9.0e-48 187.2
Blo12g00165 . 27 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.7 7.2e-45 177.6
Blo02g01054 CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 9.4e-45 177.2
Blo11g00921 . 3 156 C2C2-YABBY Transcription Factor Family AT1G23420 66.5 2.2e-43 172.9
Blo01g00625 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 75.0 1.7e-65 245.7
Blo14g00771 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 70.1 1.1e-59 226.5
Blo16g00898 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 65.9 5.6e-53 204.1
Blo02g01054 CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 4.8e-44 174.5
Blo03g00407 CCT 23 185 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.4e-43 172.2
Blo01g00279 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 7.6e-42 167.2
Blo12g00165 . 17 181 C2C2-YABBY Transcription Factor Family AT2G26580 53.3 1.1e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12969 PF04690 YABBY 2.20E-72 CL0114 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00165 Blo_Chr12 FPKM 145.653152 160.522873 115.30349 112.189072 53.565239 50.68618 50.096684 40.026588 38.823345 37.998837