Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00165 ATGTCTGTCTCATCGACTGCCTTTTCTCCGGACCACCTCTCTCCGTTAGACCAGCTCTGCTACGTTCATTGCAACTTCTGCGACACTGTCCTCGCGGTGAGTGTTCCTTGCAGTATCTTGTCCAAGACTGTTACTGTTCGATGCGGTCACTGCACCAATCTTCTGTCGGTGAACATGCGGGGCCTTCTTCTTCCTGCTTCTAACCAGCTTCATCAGCTTGGACATTCTTTCTTCTCCCCTCAAACTCTTCTGGACGAGATGAGAAATCTGCCCTCAAATGTGATGTTGAATCTGCCAAAGCCGGCTGATCAGCAGGCTATGCCAACTAGGGGCGCTGAAGAACTTCCGAGACCTCCAGTTGTTAACAGACCTCCAGAGAAGAGACAAAGAGTCCCATCTGCCTACAATCGCTTCATCAAGGACGAGATCCAACGAATCAAAGCTCGAAATCCTGATATAAGCCACAGAGAGGCTTTCAGTGCTGCTGCAAAGAACTGGGCCCACTTCCCACACATTCACTTCGGACTTATCCCTGATCAACACGTGAAGAAACCAAACATATGCCAGCAGGGTTTTCTCTGTGGAGAAGGAAAGCTTCTTTACTGTAAAGGAAAGTTGGGGAAAGATCTCCGCTTCCCTCTACTTTAA 648 48.92 MSVSSTAFSPDHLSPLDQLCYVHCNFCDTVLAVSVPCSILSKTVTVRCGHCTNLLSVNMRGLLLPASNQLHQLGHSFFSPQTLLDEMRNLPSNVMLNLPKPADQQAMPTRGAEELPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGLIPDQHVKKPNICQQGFLCGEGKLLYCKGKLGKDLRFPLL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10789311 10791353 + BLOR04184 Blo12g00165 67426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00165 215 PANTHER PROTEIN YABBY 4 1 190 - -
Blo12g00165 215 Pfam YABBY protein 16 176 IPR006780 GO:0007275
Blo12g00165 215 Gene3D High mobility group box domain 119 171 IPR036910 -
Blo12g00165 215 SUPERFAMILY HMG-box 120 169 IPR036910 -
Blo12g00165 215 PANTHER PROTEIN YABBY 6-RELATED 1 190 IPR006780 GO:0007275
Blo12g00165 215 MobiDBLite consensus disorder prediction 99 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01054 Blo-Chr2:40693906 Blo12g00165 Blo-Chr12:10789311 3.87E-79 dispersed
Blo03g00407 Blo-Chr3:11414194 Blo12g00165 Blo-Chr12:10789311 1.92E-82 dispersed
Blo12g00165 Blo-Chr12:10789311 Blo14g00771 Blo-Chr14:23660301 2.33E-53 dispersed
Blo01g00279 Blo-Chr1:3523615 Blo12g00165 Blo-Chr12:10789311 3.62E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12969 PF04690 YABBY 2.20E-72 CL0114 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00165 K25796 - sind:105171079 326.25