Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00203 ATGATTCTGAGTGGTTGTCAGGAAAAAATCACGGAGAAAAGCAAAGAGGAGGTGGATGAAGATGTGGAGGACGGTTCCTGGGCGGAGGTTGTCCGGTGGGAGAGGTTTCTTCCGAGGACGGTGCTTAGAGTTCTTCTAGTTGAGGCTGATGATTCCACTCGTTGGATTATCTCTGCACTTCTTCGTAAATGCAGCTATAGAGTTGCAGCTGTTTCTGATGGACTAAAGGCGTGGGAAACAATAAGGGCAAGACCTCAGAGTATAGATATTATAATGACTGAGGTGGATTTGCCATCAATTTCTGGCTACGCCCTTCTTTCTCTAGTCATGGAACATGAAGTTTGCAAAAACATTCCGGTTATAATGATGTCCTCTCAGGATTCAATCAGCACAGTCTTCAAGTACATGTTAAGAGGCGCTGGGGACTTTCTCATTAAACATATTAGGAGCAATGAGCTAAGGAACATATGGCAGCATGTCTGGCGGAGGCAAAGTCTGCTTGGTGAGAAAAAAACTTGTAAAGCTGTGGCATCTTTTGAGAATAATGCAGCGTGCAATTACTCAAGTGATTGTGCATCACCCAGAAAACAACATAAAGAATGCAGCGAGAAGGAGGTTGACACCCAAAGCTCTTGCACAACGCCTTCCGTGGAAGCTGAGAGTGCATACACCCCAAACATGCTGGACCCTACAAGTCTTAAGAGTCTAAGTTCTTCTATTTTGAGCATCATGGGAGAGGCAGATCACAAGCCTGGTAGTGCATTAGAAAAAGAGACGTGCGTACTTCATGGCAGAACTAGAGAAAACTTGCACGGAGTAGTCTCAAAGTTTCCATCCTGTGATGAAGTCTATTTTGTTACTCCATCGAGACAGAAAGAAGACTTGGCTTCCTTCCAAGGAATCCGCAAGGACGGATTTACAGGATCAGATATGCTTGTAGAAAATGATTTCTTCAGCAGTGCAGTAAGTAGTTGTGATGATGAATGCAATGAACTTCACTCTAGAGCTATTGACCTGATTACCACAATTGATATTAAACCGAAGTTTGTAAAAAGAGGTATACTGCCTCCTTTTCATGTCCCATCCACTGATACGTGTAGACCAGATGACAGACCTTGTAAATTCAAGGCACCGTCCTCGAGTAAAATCTCTGAAAATGAATGCACTTTTCAAACGCAGGATATGAATCATATAGGAAATGGGGCAACCCCAGTACTTGATGATTTTGGTCTAATCGAATTGCCATTTACAAACCCCCGTTTTGGAACGGTTCCAGTCCCAGATGGGAAGTTTGACGATGTAGGTGGTGGAGACAATCATGCAGTTCCATCCATGTTTTGTGCTCAATATGGTTTACCGGCCACAGGGTGGAATAGCAGAGAAGCCTGTAAGGAAGGGACGGGAATCCTTAAACAAGCAGATCCCGAAACGACAAATAACTGGATGGAGCAGAGAGATTACAACTGGCAGGTGGCAGATGAGAAGACTGCACCCTTTGAGATTTCAAAAGACGGTGGTTTCTTCAGTCATGAAGGATTCAAAGGGCCTCCCGCCCACTCCCACTCCCACTCCCACTCCCACTGCATGAGCCAAAGGGAAACAGCTTTAACAAAGTTCCGATTGAAGCGTAAAGATAGGTGCTATAGAAAAAAGGTGCGATACCAAAGCAGGGAAAGATTGGCTGAGCAGCGGCCTAGAATAAAGGGCCAGTTTGTCATTTTGCCTGGACACCACAGTCTCCAGGCAATTTTTGCCTGGACACAGCAGGCAATTTTGCCTGGAGACCTCGGTGTCCAGGCAAAACGATCTACTGAACTTCAAACGACCATAACTTTTGCTACAAGTGTCGGAATTGGACGCATAAGGTATCAAATCGAAGATCTTTGA 1887 44.83 MILSGCQEKITEKSKEEVDEDVEDGSWAEVVRWERFLPRTVLRVLLVEADDSTRWIISALLRKCSYRVAAVSDGLKAWETIRARPQSIDIIMTEVDLPSISGYALLSLVMEHEVCKNIPVIMMSSQDSISTVFKYMLRGAGDFLIKHIRSNELRNIWQHVWRRQSLLGEKKTCKAVASFENNAACNYSSDCASPRKQHKECSEKEVDTQSSCTTPSVEAESAYTPNMLDPTSLKSLSSSILSIMGEADHKPGSALEKETCVLHGRTRENLHGVVSKFPSCDEVYFVTPSRQKEDLASFQGIRKDGFTGSDMLVENDFFSSAVSSCDDECNELHSRAIDLITTIDIKPKFVKRGILPPFHVPSTDTCRPDDRPCKFKAPSSSKISENECTFQTQDMNHIGNGATPVLDDFGLIELPFTNPRFGTVPVPDGKFDDVGGGDNHAVPSMFCAQYGLPATGWNSREACKEGTGILKQADPETTNNWMEQRDYNWQVADEKTAPFEISKDGGFFSHEGFKGPPAHSHSHSHSHCMSQRETALTKFRLKRKDRCYRKKVRYQSRERLAEQRPRIKGQFVILPGHHSLQAIFAWTQQAILPGDLGVQAKRSTELQTTITFATSVGIGRIRYQIEDL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13165601 13176407 - BLOR04222 Blo12g00203 67464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00203 628 ProSiteProfiles CCT domain profile. 532 574 IPR010402 GO:0005515
Blo12g00203 628 Gene3D - 42 206 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 350 IPR045279 GO:0009736
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 12 350 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 520 566 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 520 566 IPR045279 GO:0009736
Blo12g00203 628 Pfam Response regulator receiver domain 44 156 IPR001789 GO:0000160
Blo12g00203 628 Pfam CCT motif 532 572 IPR010402 GO:0005515
Blo12g00203 628 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Blo12g00203 628 SUPERFAMILY CheY-like 42 176 IPR011006 -
Blo12g00203 628 SMART REC_2 42 157 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00203 Blo-Chr12:13165601 Blo12g00454 Blo-Chr12:22076112 5.17E-43 dispersed
Blo15g00319 Blo-Chr15:3679218 Blo12g00203 Blo-Chr12:13165601 5.93E-12 dispersed
Blo07g00315 Blo-Chr7:3988006 Blo12g00203 Blo-Chr12:13165601 4.07E-16 transposed
Blo01g00254 Blo-Chr1:3260216 Blo12g00203 Blo-Chr12:13165601 4.72E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12976 PF00072 Response_reg 6.80E-17 CL0304 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00203 K12130 - pop:7486808 357.066