Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00203 ATGATTCTGAGTGGTTGTCAGGAAAAAATCACGGAGAAAAGCAAAGAGGAGGTGGATGAAGATGTGGAGGACGGTTCCTGGGCGGAGGTTGTCCGGTGGGAGAGGTTTCTTCCGAGGACGGTGCTTAGAGTTCTTCTAGTTGAGGCTGATGATTCCACTCGTTGGATTATCTCTGCACTTCTTCGTAAATGCAGCTATAGAGTTGCAGCTGTTTCTGATGGACTAAAGGCGTGGGAAACAATAAGGGCAAGACCTCAGAGTATAGATATTATAATGACTGAGGTGGATTTGCCATCAATTTCTGGCTACGCCCTTCTTTCTCTAGTCATGGAACATGAAGTTTGCAAAAACATTCCGGTTATAATGATGTCCTCTCAGGATTCAATCAGCACAGTCTTCAAGTACATGTTAAGAGGCGCTGGGGACTTTCTCATTAAACATATTAGGAGCAATGAGCTAAGGAACATATGGCAGCATGTCTGGCGGAGGCAAAGTCTGCTTGGTGAGAAAAAAACTTGTAAAGCTGTGGCATCTTTTGAGAATAATGCAGCGTGCAATTACTCAAGTGATTGTGCATCACCCAGAAAACAACATAAAGAATGCAGCGAGAAGGAGGTTGACACCCAAAGCTCTTGCACAACGCCTTCCGTGGAAGCTGAGAGTGCATACACCCCAAACATGCTGGACCCTACAAGTCTTAAGAGTCTAAGTTCTTCTATTTTGAGCATCATGGGAGAGGCAGATCACAAGCCTGGTAGTGCATTAGAAAAAGAGACGTGCGTACTTCATGGCAGAACTAGAGAAAACTTGCACGGAGTAGTCTCAAAGTTTCCATCCTGTGATGAAGTCTATTTTGTTACTCCATCGAGACAGAAAGAAGACTTGGCTTCCTTCCAAGGAATCCGCAAGGACGGATTTACAGGATCAGATATGCTTGTAGAAAATGATTTCTTCAGCAGTGCAGTAAGTAGTTGTGATGATGAATGCAATGAACTTCACTCTAGAGCTATTGACCTGATTACCACAATTGATATTAAACCGAAGTTTGTAAAAAGAGGTATACTGCCTCCTTTTCATGTCCCATCCACTGATACGTGTAGACCAGATGACAGACCTTGTAAATTCAAGGCACCGTCCTCGAGTAAAATCTCTGAAAATGAATGCACTTTTCAAACGCAGGATATGAATCATATAGGAAATGGGGCAACCCCAGTACTTGATGATTTTGGTCTAATCGAATTGCCATTTACAAACCCCCGTTTTGGAACGGTTCCAGTCCCAGATGGGAAGTTTGACGATGTAGGTGGTGGAGACAATCATGCAGTTCCATCCATGTTTTGTGCTCAATATGGTTTACCGGCCACAGGGTGGAATAGCAGAGAAGCCTGTAAGGAAGGGACGGGAATCCTTAAACAAGCAGATCCCGAAACGACAAATAACTGGATGGAGCAGAGAGATTACAACTGGCAGGTGGCAGATGAGAAGACTGCACCCTTTGAGATTTCAAAAGACGGTGGTTTCTTCAGTCATGAAGGATTCAAAGGGCCTCCCGCCCACTCCCACTCCCACTCCCACTCCCACTGCATGAGCCAAAGGGAAACAGCTTTAACAAAGTTCCGATTGAAGCGTAAAGATAGGTGCTATAGAAAAAAGGTGCGATACCAAAGCAGGGAAAGATTGGCTGAGCAGCGGCCTAGAATAAAGGGCCAGTTTGTCATTTTGCCTGGACACCACAGTCTCCAGGCAATTTTTGCCTGGACACAGCAGGCAATTTTGCCTGGAGACCTCGGTGTCCAGGCAAAACGATCTACTGAACTTCAAACGACCATAACTTTTGCTACAAGTGTCGGAATTGGACGCATAAGGTATCAAATCGAAGATCTTTGA 1887 44.83 MILSGCQEKITEKSKEEVDEDVEDGSWAEVVRWERFLPRTVLRVLLVEADDSTRWIISALLRKCSYRVAAVSDGLKAWETIRARPQSIDIIMTEVDLPSISGYALLSLVMEHEVCKNIPVIMMSSQDSISTVFKYMLRGAGDFLIKHIRSNELRNIWQHVWRRQSLLGEKKTCKAVASFENNAACNYSSDCASPRKQHKECSEKEVDTQSSCTTPSVEAESAYTPNMLDPTSLKSLSSSILSIMGEADHKPGSALEKETCVLHGRTRENLHGVVSKFPSCDEVYFVTPSRQKEDLASFQGIRKDGFTGSDMLVENDFFSSAVSSCDDECNELHSRAIDLITTIDIKPKFVKRGILPPFHVPSTDTCRPDDRPCKFKAPSSSKISENECTFQTQDMNHIGNGATPVLDDFGLIELPFTNPRFGTVPVPDGKFDDVGGGDNHAVPSMFCAQYGLPATGWNSREACKEGTGILKQADPETTNNWMEQRDYNWQVADEKTAPFEISKDGGFFSHEGFKGPPAHSHSHSHSHCMSQRETALTKFRLKRKDRCYRKKVRYQSRERLAEQRPRIKGQFVILPGHHSLQAIFAWTQQAILPGDLGVQAKRSTELQTTITFATSVGIGRIRYQIEDL 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13165601 13176407 - BLOR04222 Blo12g00203 67464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00203 628 ProSiteProfiles CCT domain profile. 532 574 IPR010402 GO:0005515
Blo12g00203 628 Gene3D - 42 206 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 350 IPR045279 GO:0009736
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 12 350 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 520 566 - -
Blo12g00203 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 520 566 IPR045279 GO:0009736
Blo12g00203 628 Pfam Response regulator receiver domain 44 156 IPR001789 GO:0000160
Blo12g00203 628 Pfam CCT motif 532 572 IPR010402 GO:0005515
Blo12g00203 628 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Blo12g00203 628 SUPERFAMILY CheY-like 42 176 IPR011006 -
Blo12g00203 628 SMART REC_2 42 157 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00203 K12130 PRR5; pseudo-response regulator 5 - pop:7486808 357.066
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00203 Blo-Chr12:13165601 Blo12g00454 Blo-Chr12:22076112 5.17E-43 dispersed
Blo15g00319 Blo-Chr15:3679218 Blo12g00203 Blo-Chr12:13165601 5.93E-12 dispersed
Blo07g00315 Blo-Chr7:3988006 Blo12g00203 Blo-Chr12:13165601 4.07E-16 transposed
Blo01g00254 Blo-Chr1:3260216 Blo12g00203 Blo-Chr12:13165601 4.72E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g611 . Blo12g00203 . Bda08g00081 . Bpe05g01054 Bma04g00931 Bma05g01202 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0978 . . . . . . . . . Bpe04g00969 . . . . Cmo14g02228 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00772 . 76 337 Response Regulator Gene Family AT3G16857 51.2 2.5e-69 260.4
Blo16g00756 . 76 276 Response Regulator Gene Family AT3G16857 55.6 4.4e-58 223.0
Blo16g01182 . 52 256 Response Regulator Gene Family AT3G16857 52.4 2.3e-54 210.7
Blo16g00870 BCT,CCT,ECH 15 270 Response Regulator Gene Family AT4G31920 59.0 1.9e-81 300.4
Blo01g00600 BCT,CCT,ECH 1 273 Response Regulator Gene Family AT4G31920 54.6 1.2e-75 281.2
Blo01g00772 . 34 292 Response Regulator Gene Family AT4G31920 55.4 1.6e-72 270.8
Blo01g00060 CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 56.6 1.5e-70 264.2
Blo12g00090 . 25 272 Response Regulator Gene Family AT4G31920 59.6 3.4e-70 263.1
Blo16g00756 . 36 292 Response Regulator Gene Family AT4G31920 52.9 1.6e-67 254.2
Blo07g00160 CCT,ECH 557 812 Response Regulator Gene Family AT4G31920 51.6 6.7e-66 248.8
Blo16g01182 . 11 256 Response Regulator Gene Family AT4G31920 51.2 5.8e-62 235.7
Blo01g00772 . 117 285 Response Regulator Gene Family AT1G67710 53.1 2.3e-40 163.7
Blo07g00160 CCT,ECH 640 803 Response Regulator Gene Family AT1G67710 51.2 1.2e-36 151.4
Blo16g00756 . 117 276 Response Regulator Gene Family AT1G67710 53.7 2.0e-36 150.6
Blo12g00090 . 27 381 Response Regulator Gene Family AT2G25180 50.4 1.2e-76 284.6
Blo01g00772 . 31 292 Response Regulator Gene Family AT2G25180 57.3 1.0e-75 281.6
Blo07g00160 CCT,ECH 559 830 Response Regulator Gene Family AT2G25180 57.1 1.4e-72 271.2
Blo16g00756 . 36 276 Response Regulator Gene Family AT2G25180 56.0 3.4e-68 256.5
Blo16g01182 . 11 256 Response Regulator Gene Family AT2G25180 54.0 4.5e-68 256.1
Blo01g00772 . 97 341 Response Regulator Gene Family AT2G01760 55.8 1.3e-61 233.8
Blo16g00756 . 97 276 Response Regulator Gene Family AT2G01760 61.4 6.3e-53 204.9
Blo01g00060 CCT,ECH 27 322 Response Regulator Gene Family AT5G58080 52.1 2.6e-66 250.4
Blo07g00160 CCT,ECH 559 845 Response Regulator Gene Family AT5G58080 52.2 1.7e-65 247.7
Blo07g00160 CCT,ECH 532 783 Response Regulator Gene Family AT4G16110 68.6 4.4e-80 296.2
Blo12g00090 . 15 251 Response Regulator Gene Family AT4G16110 69.8 7.5e-80 295.4
Blo01g00060 CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 72.6 4.8e-79 292.7
Blo01g00772 . 24 265 Response Regulator Gene Family AT4G16110 58.0 2.2e-68 257.3
Blo16g00756 . 34 265 Response Regulator Gene Family AT4G16110 59.1 2.2e-68 257.3
Blo08g00530 CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 57.4 3.8e-60 229.9
Blo16g01182 . 10 235 Response Regulator Gene Family AT4G16110 52.5 3.0e-57 220.3
Blo16g00206 BCT 24 158 Response Regulator Gene Family AT3G48100 75.2 4.5e-51 198.0
Blo11g00883 . 32 185 Response Regulator Gene Family AT3G48100 63.6 8.5e-50 193.7
Blo06g00861 . 22 189 Response Regulator Gene Family AT3G48100 61.3 8.5e-50 193.7
Blo04g00749 BCT 13 182 Response Regulator Gene Family AT3G48100 61.0 1.4e-47 186.4
Blo09g00375 BCT,CCT 3 149 Response Regulator Gene Family AT3G48100 55.8 1.6e-40 162.9
Blo11g00883 . 1 163 Response Regulator Gene Family AT1G59940 65.2 4.5e-54 208.8
Blo06g00861 . 1 164 Response Regulator Gene Family AT1G59940 64.8 1.1e-52 204.1
Blo16g00206 BCT 15 150 Response Regulator Gene Family AT1G59940 73.0 6.7e-50 194.9
Blo04g00749 BCT 4 159 Response Regulator Gene Family AT1G59940 59.9 9.4e-44 174.5
Blo09g00375 BCT,CCT 8 145 Response Regulator Gene Family AT1G59940 61.6 4.8e-40 162.2
Blo11g00883 . 19 188 Response Regulator Gene Family AT1G10470 64.9 2.6e-54 209.1
Blo06g00861 . 28 192 Response Regulator Gene Family AT1G10470 66.1 5.4e-52 201.4
Blo16g00206 BCT 15 177 Response Regulator Gene Family AT1G10470 65.2 1.0e-50 197.2
Blo04g00749 BCT 4 175 Response Regulator Gene Family AT1G10470 56.6 4.2e-44 175.3
Blo09g00375 BCT,CCT 10 161 Response Regulator Gene Family AT1G10470 56.6 2.1e-40 162.9
Blo16g00206 BCT 24 158 Response Regulator Gene Family AT3G48100 75.2 4.5e-51 198.0
Blo11g00883 . 32 185 Response Regulator Gene Family AT3G48100 63.6 8.5e-50 193.7
Blo06g00861 . 22 189 Response Regulator Gene Family AT3G48100 61.3 8.5e-50 193.7
Blo04g00749 BCT 13 182 Response Regulator Gene Family AT3G48100 61.0 1.4e-47 186.4
Blo09g00375 BCT,CCT 3 149 Response Regulator Gene Family AT3G48100 55.8 1.6e-40 162.9
Blo16g00206 BCT 12 148 Response Regulator Gene Family AT5G62920 77.5 4.1e-52 201.4
Blo04g00749 BCT 13 181 Response Regulator Gene Family AT5G62920 63.5 5.6e-49 191.0
Blo11g00883 . 30 176 Response Regulator Gene Family AT5G62920 65.3 6.2e-48 187.6
Blo06g00861 . 30 167 Response Regulator Gene Family AT5G62920 71.9 1.4e-47 186.4
Blo09g00375 BCT,CCT 10 145 Response Regulator Gene Family AT5G62920 60.3 3.6e-40 161.8
Blo16g00206 BCT 5 172 Response Regulator Gene Family AT1G19050 67.3 4.6e-52 201.4
Blo04g00749 BCT 12 160 Response Regulator Gene Family AT1G19050 64.0 4.1e-45 178.3
Blo11g00883 . 31 187 Response Regulator Gene Family AT1G19050 58.5 7.8e-44 174.1
Blo06g00861 . 26 164 Response Regulator Gene Family AT1G19050 66.2 1.3e-43 173.3
Blo09g00375 BCT,CCT 8 150 Response Regulator Gene Family AT1G19050 55.9 3.4e-39 158.7
Blo09g00375 BCT,CCT 1 149 Response Regulator Gene Family AT2G41310 73.3 6.7e-57 217.6
Blo11g00883 . 33 160 Response Regulator Gene Family AT2G41310 59.3 7.5e-40 161.0
Blo16g00206 BCT 23 147 Response Regulator Gene Family AT2G41310 61.9 3.7e-39 158.7
Blo06g00861 . 33 161 Response Regulator Gene Family AT2G41310 59.6 8.3e-39 157.5
Blo09g00375 BCT,CCT 1 154 Response Regulator Gene Family AT3G57040 75.2 3.0e-60 228.8
Blo11g00883 . 31 160 Response Regulator Gene Family AT3G57040 59.7 6.4e-42 167.9
Blo06g00861 . 31 161 Response Regulator Gene Family AT3G57040 60.0 3.2e-41 165.6
Blo16g00206 BCT 23 147 Response Regulator Gene Family AT3G57040 61.8 2.0e-40 162.9
Blo04g00749 BCT 12 166 Response Regulator Gene Family AT3G57040 52.1 1.6e-37 153.3
Blo01g01297 . 27 173 Response Regulator Gene Family AT3G57040 54.7 2.1e-37 152.9
Blo16g00206 BCT 21 172 Response Regulator Gene Family AT1G74890 68.2 5.0e-51 198.0
Blo04g00749 BCT 10 181 Response Regulator Gene Family AT1G74890 58.6 8.3e-46 180.6
Blo06g00861 . 23 163 Response Regulator Gene Family AT1G74890 68.8 1.1e-45 180.3
Blo11g00883 . 25 162 Response Regulator Gene Family AT1G74890 65.9 9.2e-45 177.2
Blo09g00375 BCT,CCT 8 145 Response Regulator Gene Family AT1G74890 59.4 1.1e-40 163.7
Blo11g00883 . 30 157 Response Regulator Gene Family AT2G40670 60.3 1.0e-38 156.8
Blo09g00375 BCT,CCT 6 148 Response Regulator Gene Family AT2G40670 55.2 1.4e-38 156.4
Blo16g00206 BCT 23 147 Response Regulator Gene Family AT2G40670 61.8 6.7e-38 154.1
Blo06g00861 . 30 161 Response Regulator Gene Family AT2G40670 60.0 8.8e-38 153.7
Blo11g00883 . 16 157 Response Regulator Gene Family AT3G56380 57.0 4.6e-41 164.5
Blo09g00375 BCT,CCT 6 148 Response Regulator Gene Family AT3G56380 55.6 1.8e-40 162.5
Blo06g00861 . 22 161 Response Regulator Gene Family AT3G56380 58.9 3.9e-40 161.4
Blo16g00206 BCT 23 147 Response Regulator Gene Family AT3G56380 62.5 5.7e-39 157.5
Blo04g00749 BCT 12 163 Response Regulator Gene Family AT3G56380 51.3 9.0e-37 150.2
Blo01g00772 . 76 337 Response Regulator Gene Family AT3G16857 51.2 2.5e-69 260.4
Blo16g00756 . 76 276 Response Regulator Gene Family AT3G16857 55.6 4.4e-58 223.0
Blo16g01182 . 52 256 Response Regulator Gene Family AT3G16857 52.4 2.3e-54 210.7
Blo07g00160 CCT,ECH 532 783 Response Regulator Gene Family AT4G16110 68.6 4.4e-80 296.2
Blo12g00090 . 15 251 Response Regulator Gene Family AT4G16110 69.8 7.5e-80 295.4
Blo01g00060 CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 72.6 4.8e-79 292.7
Blo01g00772 . 24 265 Response Regulator Gene Family AT4G16110 58.0 2.2e-68 257.3
Blo16g00756 . 34 265 Response Regulator Gene Family AT4G16110 59.1 2.2e-68 257.3
Blo08g00530 CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 57.4 3.8e-60 229.9
Blo16g01182 . 10 235 Response Regulator Gene Family AT4G16110 52.5 3.0e-57 220.3
Blo16g00870 BCT,CCT,ECH 15 270 Response Regulator Gene Family AT4G31920 59.0 1.9e-81 300.4
Blo01g00600 BCT,CCT,ECH 1 273 Response Regulator Gene Family AT4G31920 54.6 1.2e-75 281.2
Blo01g00772 . 34 292 Response Regulator Gene Family AT4G31920 55.4 1.6e-72 270.8
Blo01g00060 CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 56.6 1.5e-70 264.2
Blo12g00090 . 25 272 Response Regulator Gene Family AT4G31920 59.6 3.4e-70 263.1
Blo16g00756 . 36 292 Response Regulator Gene Family AT4G31920 52.9 1.6e-67 254.2
Blo07g00160 CCT,ECH 557 812 Response Regulator Gene Family AT4G31920 51.6 6.7e-66 248.8
Blo16g01182 . 11 256 Response Regulator Gene Family AT4G31920 51.2 5.8e-62 235.7
Blo01g00772 . 117 285 Response Regulator Gene Family AT1G67710 53.1 2.3e-40 163.7
Blo07g00160 CCT,ECH 640 803 Response Regulator Gene Family AT1G67710 51.2 1.2e-36 151.4
Blo16g00756 . 117 276 Response Regulator Gene Family AT1G67710 53.7 2.0e-36 150.6
Blo12g00090 . 27 381 Response Regulator Gene Family AT2G25180 50.4 1.2e-76 284.6
Blo01g00772 . 31 292 Response Regulator Gene Family AT2G25180 57.3 1.0e-75 281.6
Blo07g00160 CCT,ECH 559 830 Response Regulator Gene Family AT2G25180 57.1 1.4e-72 271.2
Blo16g00756 . 36 276 Response Regulator Gene Family AT2G25180 56.0 3.4e-68 256.5
Blo16g01182 . 11 256 Response Regulator Gene Family AT2G25180 54.0 4.5e-68 256.1
Blo01g00772 . 97 341 Response Regulator Gene Family AT2G01760 55.8 1.3e-61 233.8
Blo16g00756 . 97 276 Response Regulator Gene Family AT2G01760 61.4 6.3e-53 204.9
Blo01g00060 CCT,ECH 27 322 Response Regulator Gene Family AT5G58080 52.1 2.6e-66 250.4
Blo07g00160 CCT,ECH 559 845 Response Regulator Gene Family AT5G58080 52.2 1.7e-65 247.7
Blo12g00454 . 65 265 Response Regulator Gene Family AT5G60100 64.6 3.5e-64 242.7
Blo07g00315 . 296 434 Response Regulator Gene Family AT5G60100 61.2 2.4e-44 176.8
Blo12g00203 . 28 163 Response Regulator Gene Family AT5G60100 59.6 3.2e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014798 1 0 2 2 2 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 0 0 2 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12976 PF00072 Response_reg 6.80E-17 CL0304 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00203 Blo_Chr12 FPKM 6.905569 8.055392 5.854803 5.497444 6.060268 7.038445 6.823133 7.160993 6.587274 6.824435