Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00220 ATGAAGATAGACCTGGGTTTGGATGGTGGATTGTGGAACGAGGAAGATAAAAAAGCTGTAGCAGCCATTTTAGGCAGTCGAGCTTTTGACTATTTGCTGTCAATTTTAAGTAGAAATGACAACCTTCTAATAGCAATGGGGAATGACGAGAATTTGCAAAACAAGCTATCTGACCTCGTGGACTCCCCAGATGGTTCTAATTTTAATTGGAACTATGCAATTTTTTGGCAAATTTCTCGGTCCAAATTGGGTCACTATGTTTTAGGATGGGGAGATGGGTCATGCAGAGAAGCTAGAGATGGAGAAGAATCCGAAGCTACAAGAATTCTTAGAATCCAACAAGATCTGACACAACAAAGAATGAGAAGAAGAGTTCTTCAGAAGCTTCATGCACTATTTGGTGGATCAGATGAGGATGATTATGCTCTTGTTTTAGACCGAGTTACTGATACAGAAATGTTCTTCCTCACATCCATGTACTTCTTGTTTCCTTACGGGGAAGGTGGCCCCGGTAAGTGTATGGCATCTGGGAAACATGTTTGGCTCGTGGACACCCTCAGATCAAATTCTGAGTATTGTGTTCGATCTTTTCTTGCTAGATCAGCTGGAATACAGACTATTGCTCTGGTACCAACTGATCTTGGAGTAGTTGAATTGGGTTCTGTGAGAGTTGTCGAAGAAAGCTTAGAATTGGTGCAATCGATTAGATTACTCTTTTCATCGCTCAATGAGGTTAATTCAATGGCTGGTTTGCAGGCAATCGGCATGAAGAAAGACGATGGGATTGATTTTGCTAGTTTGCAGATTGCAGAGAAAAGGGGATTGATTCCAGAGAATTTTGGGAAGGATTTAAACATTTCGAACTTGGGTGGATCTCATGTTGCTATTGAGGACAATGAATGGAATGGTTTTTCAAATTCAATTGGAAACCCTCAAAATGGCGACCTTAATGGGCCGACATGGGCGAATCAAGGAAGTTTTCTGAAGGAGATTGCTTACAAATCGAGGGATGATGTTTTAATGAAACACCCCCAAGACCCCATGCAAATGAAACTCAACTTTTCGATGGGTACTTTAGCACCTTCAATGATTTTGCCTGAATCTAAGTTTTCAAACGACGAAGCTTCCTGCAAGGAAGAAAAGCTTCACCCGTCCGAGGAACCGAGGCCGCGCAAACGAGGCAGAAAACCTGCAAATGGAAGGGAAGAGCCTCTCAATCACGTAGAGGCAGAGAGGCAGAGGAGAGAGAAGCTTAACCAGCGGTTCTACGCATTGCGAGCCGTAGTCCCAAATGTCTCCAAGATGGACAAGGCGTCCTTGTTAGCAGACGCCATTAACTACATCAAAGAGCTTCAATCAAAGCTCACAGCCACGATGGAAGTAGAAAAAAGAAAATATGTTGGTAATTCAATGGATTCGTTGTCCATGGAGGATGATACAAAGGCAGAACACAACAGAATCACCCCACCTGCAGTTGATATTGAAGCTGCCAATGGCGAAGTTATAGTAAGACTGAGCAGTCCTTTGGATTCTCACCCTGCCGCAAAAATAATCCGAGGATTTGAAGACACTGGGACCGATGTTGTGGAATCGAAACTCGTTGCAGGAAGTGACACTGTACTTCATTCTTTCGTGATTAAGCCTCGAGGATCGCAACAAATGACGATTGACAAGTTAGCCGAAGCATTTTCGAATTGA 1698 43.05 MKIDLGLDGGLWNEEDKKAVAAILGSRAFDYLLSILSRNDNLLIAMGNDENLQNKLSDLVDSPDGSNFNWNYAIFWQISRSKLGHYVLGWGDGSCREARDGEESEATRILRIQQDLTQQRMRRRVLQKLHALFGGSDEDDYALVLDRVTDTEMFFLTSMYFLFPYGEGGPGKCMASGKHVWLVDTLRSNSEYCVRSFLARSAGIQTIALVPTDLGVVELGSVRVVEESLELVQSIRLLFSSLNEVNSMAGLQAIGMKKDDGIDFASLQIAEKRGLIPENFGKDLNISNLGGSHVAIEDNEWNGFSNSIGNPQNGDLNGPTWANQGSFLKEIAYKSRDDVLMKHPQDPMQMKLNFSMGTLAPSMILPESKFSNDEASCKEEKLHPSEEPRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLADAINYIKELQSKLTATMEVEKRKYVGNSMDSLSMEDDTKAEHNRITPPAVDIEAANGEVIVRLSSPLDSHPAAKIIRGFEDTGTDVVESKLVAGSDTVLHSFVIKPRGSQQMTIDKLAEAFSN 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14407904 14409601 + BLOR04239 Blo12g00220 67481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00220 565 Pfam Helix-loop-helix DNA-binding domain 406 452 IPR011598 GO:0046983
Blo12g00220 565 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 239 IPR025610 -
Blo12g00220 565 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 564 - -
Blo12g00220 565 PANTHER MYC 1 564 IPR045084 GO:0003700|GO:0006355
Blo12g00220 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 405 461 IPR036638 GO:0046983
Blo12g00220 565 SMART finulus 408 457 IPR011598 GO:0046983
Blo12g00220 565 Gene3D - 396 466 IPR036638 GO:0046983
Blo12g00220 565 CDD bHLH_AtAIB_like 399 475 - -
Blo12g00220 565 MobiDBLite consensus disorder prediction 372 413 - -
Blo12g00220 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo02g00322 Blo12g00220 CCT
Blo12g00220 Blo16g00474 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00220 Blo-Chr12:14407904 Blo16g00475 Blo-Chr16:18791477 0 dispersed
Blo12g00967 Blo-Chr12:27777376 Blo12g00220 Blo-Chr12:14407904 4.01E-07 dispersed
Blo16g01050 Blo-Chr16:38996030 Blo12g00220 Blo-Chr12:14407904 7.63E-11 dispersed
Blo18g00705 Blo-Chr18:16057959 Blo12g00220 Blo-Chr12:14407904 4.53E-06 dispersed
Blo18g00493 Blo-Chr18:6094907 Blo12g00220 Blo-Chr12:14407904 2.52E-33 transposed
Blo12g00220 Blo-Chr12:14407904 Blo16g00474 Blo-Chr16:18744818 0 wgd
Blo12g00220 Blo-Chr12:14407904 Blo02g00322 Blo-Chr2:3288369 2.96E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12978 PF14215 bHLH-MYC_N 7.10E-54 CL0161 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00220 - - qsu:111989355 604.749