Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00260 ATGGCTTTGACTAATGGTTCGGATGCTTCCGGTTTGATTGTTAGCTTCGGAGAGATGCTGATCGATTTTGTTCCTACCGTTTCCGGCGTCTCCTTGGCCGAAGCCCCTGGTTTTCTCAAGGCTCCAGGCGGTGCTCCGGCCAATGTTGCGATCGCCGTGAGCAGACTTGGAGGCAAAGCGGCTTTCGTCGGAAAGCTTGGAGACGATGAATTCGGTCACATGCTCGCCGGAATCTTGAAGGAAAACGGCGTCTCTGGCGATGGGATCAGCTTCGACGAGGGCGCCAGAACTGCGTTGGCGTTCGTCACTCTTCGCGCCGACGGGGAGCGCGAGTTCATGTTCTACCGCAATCCTAGCGCAGATATGTTGCTGAAGCCGGATGAGCTAAATCTGGAGCTGATCAGATCCGCCAGAGTGTTTCACTACGGATCCATCAGCTTGATCGTGGAGCCATGCAGATCGGCGCATATGAAGGCTATGCAGGTGGCAAAGGACGCCGGAGCCCTTCTCTCCTACGACCCTAACCTCCGTCTACCTTTATGGCCTTCGCCTGAGGAGGCTCGCGAGCAGATCTTGAGCATATGGGACAAGGCGGAAGTTATCAAGGTTAGCGATGTCGAGCTGGAGTTCCTCACCGGAAGTAACAAAATCGATGATGAATCCGCTTTGTCACTGTGGCATGATAATCTCAAGCTTCTCCTCGTCACTCTCGGTGAGCATGGCTGCAGATACTACACCAAGGCTTTCCGTGGATCTGTGGAGGCTTTCCACGTGAACACAGTCGACACAACTGGCGCAGGCGACTCCTTCGTTGGTGCTCTGCTTTGCAAGATTGTCGACGACCAATCCATCCTTGAAGATGAAAAGAGGCTGAGGGAAGTACTGTTGTTTTCCAATGCATGTGGAGCCATTACCACTACCAAAAAGGGGGCCATTCCAGCTCTTCCCACCGAGGCTGATGTCCTCGCCTTGATCAAGGGCGGCGCTTAG 990 54.14 MALTNGSDASGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVSGDGISFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPDELNLELIRSARVFHYGSISLIVEPCRSAHMKAMQVAKDAGALLSYDPNLRLPLWPSPEEAREQILSIWDKAEVIKVSDVELEFLTGSNKIDDESALSLWHDNLKLLLVTLGEHGCRYYTKAFRGSVEAFHVNTVDTTGAGDSFVGALLCKIVDDQSILEDEKRLREVLLFSNACGAITTTKKGAIPALPTEADVLALIKGGA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15929557 15931906 + BLOR04279 Blo12g00260 67521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00260 329 PANTHER HEXOKINASE FAMILY MEMBER 18 327 - -
Blo12g00260 329 Pfam pfkB family carbohydrate kinase 12 317 IPR011611 -
Blo12g00260 329 Gene3D - 10 328 IPR029056 -
Blo12g00260 329 PANTHER BNAA04G18320D PROTEIN 18 327 - -
Blo12g00260 329 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 43 67 IPR002173 GO:0016773
Blo12g00260 329 PRINTS Ribokinase signature 38 57 IPR002139 GO:0016301
Blo12g00260 329 PRINTS Ribokinase signature 233 244 IPR002139 GO:0016301
Blo12g00260 329 SUPERFAMILY Ribokinase-like 13 325 IPR029056 -
Blo12g00260 329 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 262 275 IPR002173 GO:0016773
Blo12g00260 329 CDD bac_FRK 12 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00260 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - pvy:116135378 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00197 Blo12g00260 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00412 Blo-Chr6:23781268 Blo12g00260 Blo-Chr12:15929557 3.13E-10 transposed
Blo07g01159 Blo-Chr7:31441613 Blo12g00260 Blo-Chr12:15929557 2.21E-52 transposed
Blo09g00119 Blo-Chr9:2800018 Blo12g00260 Blo-Chr12:15929557 1.18E-142 transposed
Blo16g00626 Blo-Chr16:25014386 Blo12g00260 Blo-Chr12:15929557 8.15E-145 transposed
Blo18g00456 Blo-Chr18:5095637 Blo12g00260 Blo-Chr12:15929557 8.99E-143 transposed
Blo01g00197 Blo-Chr1:2619799 Blo12g00260 Blo-Chr12:15929557 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00260 Blo_Chr12 FPKM 27.363859 31.39328 32.123867 29.638693 41.567879 35.047577 44.124447 31.78261 33.951054 29.428118