Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00264 ATGGCTCCTCCGATTAAATCGTTTAGGCGGGGTTACAAGGAGTCGGAGGAATCCGATACTCCGTCGAACAACCTCTGGGTCGGCAATTTGGCTGTGGAAGTTACCGATTCGGATTTAATGGCGCTCTTTGCTCGCTACGGTGCCCTTGATAGCGTCACCTCATATTCGTCGAGGAGCTATGCATTCGTCTTCTTCAAGCGCATGGAGGATGCGCAAGCCGCCAAGGACGCTCTGCAAGGGACTGTTGTTCGTGGGATACCGATCAATATCGAGTTTGCGAGACCGGCAAAACCTTGTAAGACTTTGTGGGTTGGAGGAATTGATCCAGGAGTTTCAAAGGAAGAAGTGGAAAAAGAATTTTCCAAGTTTGGTAAAATTGAGGATTTTAAGTATGTGCGTGACCGAAATACAGCATTTATTGAGTATTTTAGATTAGAAGATGCTTCCCAAGCCATGAGAAATATGAATGGGAAGCGACTTGGTGGAGAACAAATAGGTGTTGATTTCCTTCGTTCGCAACCGACAAGAAGAGATCAGTGGCCTGACATCAGAGATGGACAATTTCAGGGTAGAAAGATGGGGCTGGTTAATATCCAATCTGGTAATAAAAGACAACTGCCTTCTCAGTCTTTTGAAGGATGGAGAGGAGAGAGTCAACCCAGTAAAGTTTTATGGGTTGGGTACCCACCTTCTGTTCAAATTGACGAACAAATGCTTCATAATGCCATGATTTTATTTGGTGAGATTGAGAATATTAAGAGTTTTCCCTCAAGACATTGTTCATTTGTGGAATTTAGAAGTGTTGACGAAGCACGACGAGCTAAGGAGGGCTTGCAGGGTCGACTTTTCAACAATCCTCGAATTGTAATAATGTTTTCAAGTAGTGAGTTGGTGCCTGGAAAAGAATTTGCAGGTGCTTATGATGGAGTTAAGGGCCCTAAGCCTGAGATTCTGCTCAATGAGCCTCCTTTTCAATCTTCACATTTAGATGCTTTGGGTCATAGTCATCCGTTGACGAATAATTTTACCGGATTGCTGCCATCTGGTGCCCCTCTGGAACCAAATATGTTGACAAGATCATTTGGTCATGGTAATTTGGAACCCCTTCTTCCTGCTCCTGATTTTAATGATTTTCCAGCACCACATAATCTTCAGGATACAAATAGCAAAAGTTTTATGGGTCCAAATTTGAGAAGGTTGTCTCCATCTTCAACTGGAATTCTTTCTTCTCCTGCACCTGATGCCAATTCATTCAGTGGCGATACTGCTTTTCATGTAAGAAAAATGAATGACCAGGGGTTGGGATCAGATCAACACTACAGGTTTGGTTCAATTGCTGAAGGGCTTACTCCTGTTCCTTTCGTGAATGGCACAGGAAGGAACCGCATAAGTCCTGCAGGTGCAAATGTGACAGCAAGTCGACCTGTTCAACCACATTCTGATAGTGATTTTGTGTGGCGTGGGATGATTGCAAAGGGAGGAACGCCTGTTTGTCATGCTCGGTGTGTCCCCATTGGAAAAGGAATAGGCAGTGAGCTTCCTGAAGTTGTTAACTGTTCTGCTAGAACTGGTTTGGATCAGCTCACTAAACATTATGCTGAAGCCATTGGATTCGACATTGTTTTTTTCTTGCCTGATAGTGAGGACGATTTTGCATCTTACACAGAGTTCCTTCACTATTTGGGTGGAAAAAACCGTGCTGGTGTTGCCAAGTTTGATAATGGTACTACTTTGTTTTTGGTTCCTCCTTCAGATTTTTTAAGAATAGTCTTGAAAGTTGGTGGCCCAGAGCGTTTATATGGTGTTGTTCTCAAATTTTCACAAGCTGTAAATAGTGAACCACCGCCACCTCAGTTAAATCTACCTTTTTCATCTCAGTCTGCTGAGAGAAAGCAAGTTCTATCTGCTCCAGCTGAGTACGGTCTACTGCCCTTGAAAGATGAGCATATTCCAGCGCCTGATTATAAGAGAGCTCTGCATGAAAACTCGAAGGCTTTTTCTAAGCCATTTTTTACATCTGTAAATGAGTCATTACCCATGCGGTCAATACCCCAGGAGGCAGTTTCTAAACCTGGAGTTTCATTAACACCTGAGCTTATAGCCACCTTGGCTACTTTAATGCCTGGGAAGAATCAATCATCTACGTTAGAAAGTTTTAAGCTATCTTCAGGATCGTCCACTATCAGACATTCTCTACCCCCTACTGGATTACAAGATCAAAAACCATCTGACCATACAGGTCCCTCCCCGCAAATGGATAGTCATGCTAATATGCAGATGCAAAGTTATTTGCAATATAAGGCCTACCCTTCCCTCCCAAGTCTGTCTAGCCATCCTGCACAATTGGTCAATGGAAGCACCCATATGGAAGGCTCTACTGTCAGCTTGTCACATCAGGTTACTCTTCCTCCTAGGCCTTGGACTAATTATGCCGCCTCTGAAAGTGGTCAAACTTCTCATTTGCTGCCGGCTAATCCTCAGTATCAGCAAGATGTTTCTCGTACTACTCTTGGAGCTCATGGAGCAACAATCAAACAACAATATGAGTCAGGGTCAGACAGCAAATATTTTGCAACCACAAACCACAACTCAATTGGAGTGGACAGAGTGAACACTGAGCTTTCTAATCAGGGGCAGCAGTTAAAATCTGCTCTGCTTGGAACGGTCAATGGGACCCCTGAAGTTGAGATTGACAAAAACCAGAGATATCAATCTACTCTTCAATTTGCGGCTAGCTTATTACAACAGATTCAGCAGCAGCAACAAGCAGACCGCAATTCTGGAAATCAATAG 2793 43.54 MAPPIKSFRRGYKESEESDTPSNNLWVGNLAVEVTDSDLMALFARYGALDSVTSYSSRSYAFVFFKRMEDAQAAKDALQGTVVRGIPINIEFARPAKPCKTLWVGGIDPGVSKEEVEKEFSKFGKIEDFKYVRDRNTAFIEYFRLEDASQAMRNMNGKRLGGEQIGVDFLRSQPTRRDQWPDIRDGQFQGRKMGLVNIQSGNKRQLPSQSFEGWRGESQPSKVLWVGYPPSVQIDEQMLHNAMILFGEIENIKSFPSRHCSFVEFRSVDEARRAKEGLQGRLFNNPRIVIMFSSSELVPGKEFAGAYDGVKGPKPEILLNEPPFQSSHLDALGHSHPLTNNFTGLLPSGAPLEPNMLTRSFGHGNLEPLLPAPDFNDFPAPHNLQDTNSKSFMGPNLRRLSPSSTGILSSPAPDANSFSGDTAFHVRKMNDQGLGSDQHYRFGSIAEGLTPVPFVNGTGRNRISPAGANVTASRPVQPHSDSDFVWRGMIAKGGTPVCHARCVPIGKGIGSELPEVVNCSARTGLDQLTKHYAEAIGFDIVFFLPDSEDDFASYTEFLHYLGGKNRAGVAKFDNGTTLFLVPPSDFLRIVLKVGGPERLYGVVLKFSQAVNSEPPPPQLNLPFSSQSAERKQVLSAPAEYGLLPLKDEHIPAPDYKRALHENSKAFSKPFFTSVNESLPMRSIPQEAVSKPGVSLTPELIATLATLMPGKNQSSTLESFKLSSGSSTIRHSLPPTGLQDQKPSDHTGPSPQMDSHANMQMQSYLQYKAYPSLPSLSSHPAQLVNGSTHMEGSTVSLSHQVTLPPRPWTNYAASESGQTSHLLPANPQYQQDVSRTTLGAHGATIKQQYESGSDSKYFATTNHNSIGVDRVNTELSNQGQQLKSALLGTVNGTPEVEIDKNQRYQSTLQFAASLLQQIQQQQQADRNSGNQ 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16012748 16019587 - BLOR04283 Blo12g00264 67525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00264 930 Gene3D - 97 206 IPR012677 -
Blo12g00264 930 CDD RRM3_Spen 102 171 - -
Blo12g00264 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 165 IPR000504 GO:0003723
Blo12g00264 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 85 IPR000504 GO:0003723
Blo12g00264 930 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 288 IPR000504 GO:0003723
Blo12g00264 930 SUPERFAMILY RNA-binding domain, RBD 98 293 IPR035979 GO:0003676
Blo12g00264 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723
Blo12g00264 930 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 928 - -
Blo12g00264 930 MobiDBLite consensus disorder prediction 712 755 - -
Blo12g00264 930 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 928 - -
Blo12g00264 930 SUPERFAMILY RNA-binding domain, RBD 15 97 IPR035979 GO:0003676
Blo12g00264 930 CDD RRM3_Spen 224 293 - -
Blo12g00264 930 CDD RRM3_Spen 25 94 - -
Blo12g00264 930 SMART rrm1_1 24 91 IPR000504 GO:0003723
Blo12g00264 930 SMART rrm1_1 223 291 IPR000504 GO:0003723
Blo12g00264 930 SMART rrm1_1 101 168 IPR000504 GO:0003723
Blo12g00264 930 Gene3D - 9 96 IPR012677 -
Blo12g00264 930 Coils Coil 900 920 - -
Blo12g00264 930 Pfam SPOC domain 478 597 IPR012921 -
Blo12g00264 930 MobiDBLite consensus disorder prediction 1 21 - -
Blo12g00264 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Blo12g00264 930 Gene3D - 213 299 IPR012677 -
Blo12g00264 930 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00264 - - - mnt:21399194 1005.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00191 Blo12g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00264 Blo-Chr12:16012748 Blo15g00404 Blo-Chr15:5763494 5.19E-08 dispersed
Blo01g00156 Blo-Chr1:2129098 Blo12g00264 Blo-Chr12:16012748 1.55E-11 wgd
Blo01g00191 Blo-Chr1:2582938 Blo12g00264 Blo-Chr12:16012748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00264 Blo_Chr12 FPKM 25.384365 27.454617 33.598488 31.821968 41.483967 33.711533 40.488178 59.586987 60.679836 62.480488