Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00265 ATGAGATTTGAGGAATTGCTTCATTTATTAGGGTCTGGGAAGCTACTTTCTGCAAACTATGGAGGCATTTACCTCGAAAGTATTCGAGGCTCGGTTTTGAGATGCTCTTATTCTGCACTCTCAATCAGAGCTTCGGGGGTTAGAGAATTCAGGGACGCCAGTGTTTCTATGAAACGTAGGAATATGATAGGGTTGGTTTTAGGAGCATCGGGCTTCTTTTTAGACTCCATGGATGTCAAGGGAGCTGGCTTGCCTCCGGAGGAAAAGCCTAAGCTGTGTGACGATGCTTGTGAGAAGGAGCTTGAAAATGTGCCAATGGTGACGACAGAGTCAGGTTTACAATATAAGGATATCAAAGTTGGTGCGGGGCCTAGTCCGCCAATTGGCTTTCAGGTGGCTGCCAATTATGTAGCCATGGTTCCATCTGGACAAATATTTGACAGTTCATTGGAGAAGGGTCAGCTATATCTTTTTCGTGTTGGTTCTGGTCAGCAGGTGATCAAGGGACTAGATGAAGGAATCTTGAGCATGAAAGCCGGGGGAAAGCGCCGGCTCTATATTCCTGGAAATCCTATTCCCTCAGTTGGCATTCCCCAAAGGCCTCAATGCTGCACCAGGAAGGCCGAGGGTGGGTCCAAACAGTCCCGTGATCTTCGATGGTGGAAAAGTATAATTATTGGTCTCTTTGGAGCGAAGTCACTCTCGTTAAGATCGGCTTGCCTGGAAGGGAATGTAGCAGCTAGAAATAGTGACGAGACAAATCAAGAAGCTGTTCTGGATCATTGCTTGCTCTTTTCTGGCTTCAGATGGTTGTTGGGGCTCCCTACGTTTTCATCTGAACAGAAGAAGTGTGATCATGCCGACATTTTAGAAAACAGGTATTTACCGGAGTCATTGCTTCGGGAAGACGATGTATTCTACGACACCATAAAACTTAGGGTTGAAGAAGCCTTTGGAGCTCTTAATTTTGAGAGAAAACATCATGTTAGTCAAGACAATATGGTAGTAGCTGATGCAAGTAAAATTAGAAAAATTTTGTTATCAAGTATTGATAGTTTGAGCAATAAGGGTCTTTACCTAATTACTAGAACACTTACTGGAGACTCAGTATATTTTGAGAAAACTCGTTGCAAGATGAAGGTGATCATTCAAAAATTTTTGGCAAAAGCAGTAAGAGGCCATACTTATGATGGTCATCAATTGGAGATTTTTAAACAGTTGTCTCAACTTCTCAGTGACATAAGAAATTACCAAAGTCCCCTGACAACTTTGACTCATAGATCTCCATCTTCTCGAGTTGCTGTAAATCAGGTATTGGATATGCTGGGGGACTTGCCAACTGAGAGCTTGTTTGCGATGCGTAGGAAGCTTAAAGGAGTTCGAATAGTGCCTAAAATGAAGCGCCACAGGCATGGGTGTGGTCGAGACCATATGATTAATCTACTGTTAGAAGTTAGTGACAAGATACTTTCTGCACTTCATGAAGACGATGGGCTGCCAGAACCATTTGCCAAAGCCATGGCTGTAGCAAATTTATCACTGAAACTGACATCAGGTTGTCACAACTCGTCCATAATAGAATTTTATGAGTTCTCGCCTAAACTAAAGACCTTGCATGATGAAATAGTAAAGGCTATATGGATGATCAAGCAGAAAATTTCCTTTCAGAAGTTGAAAAAAGTGAAACTTTTATTGGACCCTAATGCTAAAATATCCAATAGGACGTCGAAAAGTTCATCTCATAAATGCTTTCCCAAGGAGGAAATTGAAAAAGAGGTGGATTATATATTGGGTTTGAGTGCTCAATTGAAACAAGTATATTTTGATCTGGTTCCTTATCATGACTTCAATGAAGATTTTACTGCTGTATACACTGAAGAATTAGAAGAGAGTGATGAGAATGATGTTTATAGTGATGATGATGACAACTGCATCATGCAAGATGATAGTTGTTTCCATGTTAGTGGGCCAAACTGCCAAGTAGAAAGGATGGAGGAATCATTGCCTGTGTTTATTGATGATGTGTCTTTGTCAAAAGGGAGTGATTTATCCCCCTTACTAGTACACTCACAAAGAATCAATATGGATTTCGTTGGTAAAATTGACCCTAGTGATGATGTCTCTTCTTCTTTTCAAAAATTTCAACTTCTAAATGTTCGAGAAAAAATAACTCGACATGAGCAGGCGGATAACATGGATTTCTCAAGGTCTGCTCCAACTTATGGAAGTGTTGGCGCTGTTAAGACTCCACAGAAAATACATTCAAATTACACATCTGTGTCCCAATTAGACTTAGATATAAATGCTGCTTACGTTGTGCAATCAGAAGATTCTAGTTTGTCGTATGAGTTTACACAACATATTATTGACAAGCACAAGATTTACAAGAATCAATATCTTACTATTCAAGAAAATTGTGACCAGACAAGCATGTTTGCTTATAATCTCATAGGTCACATGCTAGAGGAGTATGCAAAAATGGATGGTTTGGATGTTGGTTGGAATGAAAGTTTATATTTGACTGGTGATGATACACTTCAAGACGAAACACAAGGTTTGTTGGAGAAGACTCAGAGGAAGTCAGGTTCTCAGGTGAAGTTCAAGTTGGGTTCTGAATCCACATCAGAGCCGATTCGTCAGCCTATTACAGATGTTCAGCGTGATGCAGTCACCACATCGTCACCAATTTCAGTTACAGTTTCACGTCAGAGAGTTCTAGAAGCTAAGCAGACAATTTCTGGAGTTAATGAAGATTATATAATTGTTCGAGCTTCTGAAAAGTTGATACCATCATTTTGCAAAAGGTACATTGGAACTGAACATGCTATGGTAGCTGTATTGAAGTTTGATGAGGAGAATGAAAAACTGGTACAAACCCCATACTCTATTTTTGCAGATGTCATTGCTGGTATTGGTTTTTTCTTCTCCACATTAATAGCTGTATATGAATTCATCTGTTCAGATCATGTGGAGAGCGTGCTTTTTACGTATGAGAATGGACTAATCATTCTCTGGGATCCTCACGAAGATCGAGTTGCTTTAGCTAGAGGCCACGAGTTCCTTCAATTAAAGGATGTACCTGTAGATAAGTCACCAAAAGACACAAAGCAAGAGTTTTTCGATGAGGTTGGCGAATTACTCTCAACGATCAGAATGCAATCCTGGAGTAAGAAATTGATCTCGAAGCGTGGGAAGGCAACAGTGGAGGCCGTTGAACCCGTTCAAATCGTGGCAGTGGAAGACGTTCAACCCGCGACGGCGGTGGAAGATGAAGAAACCCCCGAGCCTAAAGAAGGAGAAGTCGGATGCTCATTGGTCCGGTTCCAACCCGTTAAAGCGGGTTCAAGGTCCAAACTATTCTGGAATGCGAATTGCAAAACACGGTATTTAGAAGATATACAAAAGCGTAGAATTATAGTGTCAAAAATAGTAGATTTGGACTCTTTTGCAGGAATGAGAATTGATAGCATGCTTGAAATTGCTGGATTAGCCGGGTTGTGCCGGATGAGGGGCAGTTACTGCGAGAGAGTTATACGATTGTTTTACGCAAATTTGAGAATGTCCACCCAACCATTAGAGGTGCAGACGTATGTTTTTGGAAGGGAGTTGAAGTTCACTTCCAACGATGTAAACATTATGCTTAGATGTGTACTAGAGGAGCCAAGTGATGAATATTATCATATGGCTCGGGAGCCACCATTCGTCAAACAAGGAGGTGGATTAGCGGTGCTTAGATTGTTGCACCGGGATCCCGAGGTTGCCGAGTACAGCAAGCCAAAGGGCAAGGATTTGAATGCCTTAGCCTGA 3807 41.32 MRFEELLHLLGSGKLLSANYGGIYLESIRGSVLRCSYSALSIRASGVREFRDASVSMKRRNMIGLVLGASGFFLDSMDVKGAGLPPEEKPKLCDDACEKELENVPMVTTESGLQYKDIKVGAGPSPPIGFQVAANYVAMVPSGQIFDSSLEKGQLYLFRVGSGQQVIKGLDEGILSMKAGGKRRLYIPGNPIPSVGIPQRPQCCTRKAEGGSKQSRDLRWWKSIIIGLFGAKSLSLRSACLEGNVAARNSDETNQEAVLDHCLLFSGFRWLLGLPTFSSEQKKCDHADILENRYLPESLLREDDVFYDTIKLRVEEAFGALNFERKHHVSQDNMVVADASKIRKILLSSIDSLSNKGLYLITRTLTGDSVYFEKTRCKMKVIIQKFLAKAVRGHTYDGHQLEIFKQLSQLLSDIRNYQSPLTTLTHRSPSSRVAVNQVLDMLGDLPTESLFAMRRKLKGVRIVPKMKRHRHGCGRDHMINLLLEVSDKILSALHEDDGLPEPFAKAMAVANLSLKLTSGCHNSSIIEFYEFSPKLKTLHDEIVKAIWMIKQKISFQKLKKVKLLLDPNAKISNRTSKSSSHKCFPKEEIEKEVDYILGLSAQLKQVYFDLVPYHDFNEDFTAVYTEELEESDENDVYSDDDDNCIMQDDSCFHVSGPNCQVERMEESLPVFIDDVSLSKGSDLSPLLVHSQRINMDFVGKIDPSDDVSSSFQKFQLLNVREKITRHEQADNMDFSRSAPTYGSVGAVKTPQKIHSNYTSVSQLDLDINAAYVVQSEDSSLSYEFTQHIIDKHKIYKNQYLTIQENCDQTSMFAYNLIGHMLEEYAKMDGLDVGWNESLYLTGDDTLQDETQGLLEKTQRKSGSQVKFKLGSESTSEPIRQPITDVQRDAVTTSSPISVTVSRQRVLEAKQTISGVNEDYIIVRASEKLIPSFCKRYIGTEHAMVAVLKFDEENEKLVQTPYSIFADVIAGIGFFFSTLIAVYEFICSDHVESVLFTYENGLIILWDPHEDRVALARGHEFLQLKDVPVDKSPKDTKQEFFDEVGELLSTIRMQSWSKKLISKRGKATVEAVEPVQIVAVEDVQPATAVEDEETPEPKEGEVGCSLVRFQPVKAGSRSKLFWNANCKTRYLEDIQKRRIIVSKIVDLDSFAGMRIDSMLEIAGLAGLCRMRGSYCERVIRLFYANLRMSTQPLEVQTYVFGRELKFTSNDVNIMLRCVLEEPSDEYYHMAREPPFVKQGGGLAVLRLLHRDPEVAEYSKPKGKDLNALA 1268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16064812 16093910 - BLOR04284 Blo12g00265 67526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00265 1268 PANTHER DNA DOUBLE-STRAND BREAK REPAIR PROTEIN 573 861 - -
Blo12g00265 1268 PANTHER DNA DOUBLE-STRAND BREAK REPAIR PROTEIN 269 574 - -
Blo12g00265 1268 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 129 188 IPR001179 GO:0003755
Blo12g00265 1268 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 128 189 IPR001179 GO:0003755
Blo12g00265 1268 SUPERFAMILY FKBP-like 96 190 - -
Blo12g00265 1268 Gene3D - 102 205 IPR046357 GO:0003755
Blo12g00265 1268 PANTHER DNA DOUBLE-STRAND BREAK REPAIR PROTEIN 573 861 - -
Blo12g00265 1268 PANTHER DNA DOUBLE-STRAND BREAK REPAIR PROTEIN 269 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00265 - - - csv:101214737 442.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00135 Blo12g00265 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00135 Blo-Chr7:1829977 Blo12g00265 Blo-Chr12:16064812 0 dispersed
Blo12g00181 Blo-Chr12:12106437 Blo12g00265 Blo-Chr12:16064812 3.87E-23 dispersed
Blo12g00265 Blo-Chr12:16064812 Blo07g00284 Blo-Chr7:3295871 6.74E-114 dispersed
Blo12g00265 Blo-Chr12:16064812 Blo08g00205 Blo-Chr8:2327195 2.59E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1281 . Blo12g00265 Bda03g00973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009069 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00265 Blo_Chr12 FPKM 6.892692 8.182556 0.0 0.256429 2.205688 1.918207 2.231117 0.0 0.073143 0.110949