Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00272 ATGAAATATTTCGGAGGAATTGCAGCTGTAAAACACCCTTCTCCTAAGCTTTCTCTGACTGGTAGTTTTACTCTTTTCCTCCTTCCATTTCACTGGGTTTCCATTAGTTTCTGCTATTTTCTGGAAGTATTAGTAGAAATGGAGATGGGAAAAATGATGGGCCATAAAAGAAGTTCGTGCGCTGTTAATCAGGAAGCTGATTTCATGCCCCCTACAAGTAAAAGACACAAGGCTGGTGTTTCTATCTCTACAAAGGAGAGAAAAGAGAGGCTGAATGGAAAGATGGTAGCTCTTCAACAGCTCGTTTCACCGTATGGAAAGACGGATAAAGCTTCTGTTCTGCTGGGAGCGATGGGTTACGTTCAATTTCTCCACGAGCAGCTCAAGGTGCTGAGTGCCCCATATCTCCATGGCTCTCCAATGGCGAAGATGCGGGGGATAGAGTTAGAGACGCACAGATACAGCCTAAGAATCCGAGGTTTATGCATTGTTCCTCTCTCCTTCACTGAAGGAGTAGCTCGCAGCAATGGAGCAGATATATGGGGGGCTCCTATTTACATTAAGTCCCCTAAAGTCCCCATTTCATCACTTCATTGA 597 44.72 MKYFGGIAAVKHPSPKLSLTGSFTLFLLPFHWVSISFCYFLEVLVEMEMGKMMGHKRSSCAVNQEADFMPPTSKRHKAGVSISTKERKERLNGKMVALQQLVSPYGKTDKASVLLGAMGYVQFLHEQLKVLSAPYLHGSPMAKMRGIELETHRYSLRIRGLCIVPLSFTEGVARSNGADIWGAPIYIKSPKVPISSLH 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16483486 16484412 + BLOR04291 Blo12g00272 67533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00272 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Blo12g00272 198 SMART finulus 81 130 IPR011598 GO:0046983
Blo12g00272 198 CDD bHLH_AtbHLH_like 81 132 IPR045239 -
Blo12g00272 198 Gene3D - 71 131 IPR036638 GO:0046983
Blo12g00272 198 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 182 - -
Blo12g00272 198 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 47 182 - -
Blo12g00272 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 137 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00272 - - - pper:18793757 168.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00272 Blo-Chr12:16483486 Blo14g00505 Blo-Chr14:6846431 8.47E-20 dispersed
Blo12g00272 Blo-Chr12:16483486 Blo14g00345 Blo-Chr14:3756779 1.25E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1321 . Blo12g00272 Bda03g00963 . Bpe04g00891 Bpe14g00789 Bma04g00857 . . . . Cma14g01438 Car06g01427 . . . . Bhi01g03682 . . . . . . . . . . . . . Cone14ag0621 Cone15ag0629 . . . . . . . . . Bda13g00540 . . . . . Cmo06g01675 Cmo14g01474 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003372 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 2 1 1 1 9 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00272 Blo_Chr12 FPKM 158.190369 164.854843 0.493411 0.666974 1.828691 1.121332 2.195253 0.0 0.0 0.0