Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00276 ATGGAAGGCCCGGCCATGCTTAGGCAGCTAATCGGTCAGCTTCAGGAGCTCTGGGAACTCTACGGCTCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCACACTCACCTTCTTCAACCTCTTCCTCAACTCCCTCTCGCCCAATCTATCTCGCACCAAAGATTGTGCTTCACAAATCTTAATGACAGCTCAACAGATGATTATTATAGTCTTGTAATGGCTGCAGGAAGATCAGGAAATTACAAATTGTCAGAATCTTGCAAGCCCCCTCCTTCAAAGAAATTTCGCAAGGAGCAGAACCGGGGAAAATCAGGGGGAATCACGCATACAACAGAGGTCATGGAACAACATATTTGGAAAGACTTTCCAGAGGATCTTTTTGAAGCAGTCATCGCGAGACTTCCCATTGCTACATTTTTCCGTTTTCGTTCAGTTTGCCGGAAATGGAATACTTTGCTGAATTCTGAAAGTTTCTCCCAGCAATGTGCCCTAGTCCCAAGATCTAGCCCCTGGTTTTACACTATCAGTCACGAAAACCTCAATTCAGGAGCCATATATGACCCCTCCACAACAAAATGGCACTACCCTATCATTTCTTCTCTTCCTACTAAGCTAATAATCTTGCCAGTTGCTTCTGCAGGAGGTCTAGTGTGTTTTCTAGACATCGGCCATAGGAATTTCTACGTATGCAATCCTCTCACTCAATCTTTCAAAGAATTACCAGCTAGGTCGGTCAAGGTCTGGTCTCGGGTTGCAGTCGGGATGACTGAATATGAAAATTTAGCATGCAAGGGGTACATGATCCTCTGGGTGGGATGTGACGGAGAATATGAAGTTTATGACTCAGTTTCGAACGCTTGGTCCCGCCCTGGAAACATGCCCTCAAGCATCAAGCTCCCACTATGCTTATACTTCCGGTCACAGACTGTTTCAATAGACGGCACGCTCTACTTCATGCGGTCAGACCCAGAAGGGATTGTCTCCTACAACATGGCCTCGGCCACTTGGAAGCAGTTCATAATCCCATCCCCACCACACATGACCGATCACACACTCGCAGAGTGCAATGGGCGGCTTATGCTAGTGGGGTTATTAACCAAAAACGCTGCCACTTGCGTGTGCATATGGGAGCTTCAGAAGATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAATATCTGGTGCTTGGAGTTTTATGGGAAGCACGTTAGGATGACTTGCTTGGGTAACAAAGGCTTACTCATGTTGTCATTGAGATCCAGACAGATGAATCGATTGGTTACCTATAATGTGTTGAGCAGGGAGTGGGCGAAGGTGCCTGGCTGTGTGGTGCCGCGTGGGAGGAAGAGGCAGTGGATTGCTTGTGGCACTGCATTCTACCCTTGTCTCACTGCAGTGGCTTAG 1413 47.49 MEGPAMLRQLIGQLQELWELYGSHPLPLPLPLPLPHTHLLQPLPQLPLAQSISHQRLCFTNLNDSSTDDYYSLVMAAGRSGNYKLSESCKPPPSKKFRKEQNRGKSGGITHTTEVMEQHIWKDFPEDLFEAVIARLPIATFFRFRSVCRKWNTLLNSESFSQQCALVPRSSPWFYTISHENLNSGAIYDPSTTKWHYPIISSLPTKLIILPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVKVWSRVAVGMTEYENLACKGYMILWVGCDGEYEVYDSVSNAWSRPGNMPSSIKLPLCLYFRSQTVSIDGTLYFMRSDPEGIVSYNMASATWKQFIIPSPPHMTDHTLAECNGRLMLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLEFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNVLSREWAKVPGCVVPRGRKRQWIACGTAFYPCLTAVA 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16557595 16562106 + BLOR04295 Blo12g00276 67537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00276 470 Gene3D - 121 160 - -
Blo12g00276 470 MobiDBLite consensus disorder prediction 91 105 - -
Blo12g00276 470 PANTHER BNAA07G08860D PROTEIN 52 469 - -
Blo12g00276 470 MobiDBLite consensus disorder prediction 85 108 - -
Blo12g00276 470 SUPERFAMILY F-box domain 115 188 IPR036047 GO:0005515
Blo12g00276 470 Pfam F-box domain 121 159 IPR001810 GO:0005515
Blo12g00276 470 SMART fbox_2 124 164 IPR001810 GO:0005515
Blo12g00276 470 Gene3D - 174 457 IPR015915 GO:0005515
Blo12g00276 470 PANTHER F-BOX/KELCH-REPEAT PROTEIN 52 469 - -
Blo12g00276 470 SUPERFAMILY Galactose oxidase, central domain 185 451 IPR011043 -
Blo12g00276 470 ProSiteProfiles F-box domain profile. 118 163 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00276 - - - qsu:112038124 760.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00179 Blo12g00276 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00180 Blo-Chr1:2446182 Blo12g00276 Blo-Chr12:16557595 0 dispersed
Blo12g00276 Blo-Chr12:16557595 Blo12g01037 Blo-Chr12:28230766 2.13E-31 dispersed
Blo07g00724 Blo-Chr7:23771154 Blo12g00276 Blo-Chr12:16557595 3.21E-22 transposed
Blo12g00664 Blo-Chr12:24955888 Blo12g00276 Blo-Chr12:16557595 9.23E-28 transposed
Blo01g01431 Blo-Chr1:53149959 Blo12g00276 Blo-Chr12:16557595 2.42E-34 wgd
Blo01g00179 Blo-Chr1:2437516 Blo12g00276 Blo-Chr12:16557595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1260 Blo01g00179 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo12g00276 . . . . . . . . . . . . . Cpe17g01076 . Bhi12g02463 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005573 1 3 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00276 Blo_Chr12 FPKM 7.669683 9.252149 9.375075 10.304295 14.028513 12.400592 14.805041 15.709075 13.625838 15.227289