Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00277 ATGAACTTGCAAGCGACTGAGAAGAGAAAAGAAACTCTTGGTAGTATGTGTGATGAGAGGGCAAGGATGTTACAAGATCAATTCAATGTGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCAACCTTCCATCATGGCAAAAGTCCTTCGGCAATTGATCAAACAACTTTTGCTAGTTACACAGAAAGAACTGCTTTTGAGCGGCCTCTTACAAGTGGTGTGGCATATGCTGTAAGGGTGCTCCACTCTGAAAGAGAACAATTTGAGAAGCAGCAGGGATGGACTATTAAAAAAATGGATACACTGGAACAAACCCCAATGCGCAAAGATGATAATGCTCCGGAAACCTTGGAACCATCTCCAATTCAAGAAGAATATGCTCCAGTCATCTTTGCCCAAGATACCGTTTCCCATGTGGTCTCGATAGATATGCTATCTGGCAAGGAAGACCGTGAAAATGTTTTACGGGCAAGAGCGTCTGGAACAGGGGTCCTGACTGCACCTTTCAGATTATTGAAAACAAATCGACTTGGAGTAATATTAACTTTTGCTGTCTACAAGGTGGATCTCCCTTCAACTGCTACCCCAAATGAGAGGATTCAAGTGACTGATGGATATCTTGGCGGGATCTTTGACATTGAGTCCCTTGTGGAAAAATTACTTCAGCAACTTGCAAGCAAGCAAACCATCCTTGTCAATGTTTATGACACAACTAATCACTCACATCCAATCAGCATGTATGGTTCATATGAATCAGAAAATGGATTGCAGCATGTTAGCCCTCTCAACTTTGGAGATCCATTCAGGAAGCATGAGATGCGTTGCAGGCAAAAACCACCTTGGCCATGGCTGGCTATAACAACTTCTGTTGGTGTACTTATTATTGCATTGCTGGTTGGGCATATATTCAATGCAACCTTGAATCGAATTGCCAAAGTAGAAGATGATTATCATGATATGATGGAACTCAAGAAACAGGCGGAGGCTGCAGATGATGCTAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCCATGAACGGGGTTCTAGGAATGTTGGATATGCTCATGGACACAGATCTAGATGTGACTCAACTTGATTTTGTTAGAACTGCACAAGCAAGTGGAAAAGCTTTAGTCTCACTAATAAATGAGGTTTTGGATCAGGCAAAGATCGAATCCGGTAAGCTTGAACTTGAAGCGGTGCAGTTTGATCTGCAGGCTGTTTTGGATGATGTTTTGTCACTCTTTTCGTTAAAATCACAGGAAAAAGGAGTAGAGTTGGCAGTTTACATTTCAGATCGTGTTCCTGAGATGCTGATTGGTGATCCTGGAAGGTTTCGACAAATCATTACTAATCTTATGGGAAATTCAATCAAGGCCAGTAATTCTTTCACAGAGAAAGGACACATCTTTGTGACAGTTCATTTGGTGGAGGAGGTGATTGATTTAATTGATGTTGAGGTGGATTCTTCATCGAAGAACACATTGAGTGGCTACCCTGTTGCCAATAGACGCCGAAGTTGGATGGGATTTAGGAGTTTCGACCAAGATGGCCATTCTCCCTCCATATCACCATCATCTGAACTTGTCAACCTAATTGTATCAGTTGAAGATACAGGTGTAGGGATCCCTTTAGAGTCTCAATCACGAATTTTCACTCCTTTTATGCAAGTAAGGTCAACAACCTCCCGGACCCATGGAGGAACAGGCATTGGGCTGAGTATAAGCAAATGCTTGGTTGGGCTCATGAAGGGAGAAATTGGATTTTCAAGCATCCCCAAGATAGGTTCCACCTTCTCTTTTACTGCTGTCTTCACAAATGCTTGTACTTCCGATGAATGCGAGCTCCAACAAATTAATAAGCAATCCAACTCTTCCTTCCCTGAATTTAAGGGTATGGGAGCATTAATTGTGGACCATAGACCTGTCAGGGCGAAGATGTCGAGATATCATATTCAACGACTTGGGATTCGAGGCGATATAGTTTCAGATCTGAATCATGTCCTATCTAGTGGTAGTTTTTACACAAATATCAACGCTATTTTTGTTGAGCAGGAAATTTGGGATCAGGACCCAGCTATTTCTTTAGATCTCTTTGCCACAAGCTTGAAAAAATCTGATAAGTGGGTTCCTCCAAAATTGTTTCTTTTGTCGAACTCTTTTAGCTCTTTGAAAACAAGCACAGGTACTTTTAATGATTTGAGTCCAGTGGTCATCACAAAGCCGCTTCGAACAAGTATGCTTGCCGCCTCTCTACAACGAGCCATGGGTGTAGGGAAGAACAAGGGTCATGTTTGTAATGGGGAACTTCCTAGTTTCTCTTTGCACAATCTTCTTCTGGGAAGGAAAATTCTAGTTGTAGATGATAACATCGTCAATCTCAAAGTTGCAGCGGGTGCTCTGAAAAAGTACGGAGCTGATGTTGTTTGTGAGAGCAGAGGGCAAAATGCAATCTCACTGCTTACACCACCTCACCATTTTGATGCATGCTTTATGGATGTTCAAATGCCAGAAATGGATGGGTTCGAAGTGACAAAAAGGGTACGGAATATTGAAGATTGTACTAACAATCGACTTCAAAGTGGAGAGCTGATGGTAGAATCTTTTGAGAACATTTCAAACTGGCATTTACCTATTTTGGCCATGACTGCAGACGTAATCCAGGCTACACAGGAGGAATGCCTACGATGTGGAATGGATGGATATGTCTCCAAACCTTTTGAAGCCAAACAACTTTGTCGAGAAGTTTCTCGCTTTTTCCGATCTTAG 2787 42.12 MNLQATEKRKETLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKSPSAIDQTTFASYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKKMDTLEQTPMRKDDNAPETLEPSPIQEEYAPVIFAQDTVSHVVSIDMLSGKEDRENVLRARASGTGVLTAPFRLLKTNRLGVILTFAVYKVDLPSTATPNERIQVTDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSYESENGLQHVSPLNFGDPFRKHEMRCRQKPPWPWLAITTSVGVLIIALLVGHIFNATLNRIAKVEDDYHDMMELKKQAEAADDAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQLDFVRTAQASGKALVSLINEVLDQAKIESGKLELEAVQFDLQAVLDDVLSLFSLKSQEKGVELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKASNSFTEKGHIFVTVHLVEEVIDLIDVEVDSSSKNTLSGYPVANRRRSWMGFRSFDQDGHSPSISPSSELVNLIVSVEDTGVGIPLESQSRIFTPFMQVRSTTSRTHGGTGIGLSISKCLVGLMKGEIGFSSIPKIGSTFSFTAVFTNACTSDECELQQINKQSNSSFPEFKGMGALIVDHRPVRAKMSRYHIQRLGIRGDIVSDLNHVLSSGSFYTNINAIFVEQEIWDQDPAISLDLFATSLKKSDKWVPPKLFLLSNSFSSLKTSTGTFNDLSPVVITKPLRTSMLAASLQRAMGVGKNKGHVCNGELPSFSLHNLLLGRKILVVDDNIVNLKVAAGALKKYGADVVCESRGQNAISLLTPPHHFDACFMDVQMPEMDGFEVTKRVRNIEDCTNNRLQSGELMVESFENISNWHLPILAMTADVIQATQEECLRCGMDGYVSKPFEAKQLCREVSRFFRS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16640388 16644820 + BLOR04296 Blo12g00277 67538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00277 928 CDD PRTases_typeI 742 815 IPR000836 -
Blo12g00277 928 Gene3D CHASE domain 54 281 IPR042240 -
Blo12g00277 928 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 321 401 IPR036097 GO:0000155|GO:0007165
Blo12g00277 928 ProSiteProfiles Response regulatory domain profile. 789 926 IPR001789 GO:0000160
Blo12g00277 928 SMART HisKA_10 335 400 IPR003661 GO:0000155|GO:0007165
Blo12g00277 928 PANTHER HISTIDINE KINASE 3 1 927 - -
Blo12g00277 928 Gene3D - 303 398 - -
Blo12g00277 928 SMART CHASE_2 50 251 IPR006189 -
Blo12g00277 928 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 389 608 IPR036890 -
Blo12g00277 928 Gene3D - 784 928 - -
Blo12g00277 928 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 927 - -
Blo12g00277 928 CDD HATPase_EvgS-ArcB-TorS-like 452 611 - -
Blo12g00277 928 CDD REC_hyHK_CKI1_RcsC-like 790 922 - -
Blo12g00277 928 Gene3D - 399 614 IPR036890 -
Blo12g00277 928 Gene3D - 1 53 - -
Blo12g00277 928 ProSiteProfiles CHASE domain profile. 50 276 IPR006189 -
Blo12g00277 928 SMART REC_2 788 922 IPR001789 GO:0000160
Blo12g00277 928 Pfam CHASE domain 53 249 IPR006189 -
Blo12g00277 928 CDD HisKA 333 396 IPR003661 GO:0000155|GO:0007165
Blo12g00277 928 PRINTS Bacterial sensor protein C-terminal signature 538 552 IPR004358 GO:0016310|GO:0016772
Blo12g00277 928 PRINTS Bacterial sensor protein C-terminal signature 573 591 IPR004358 GO:0016310|GO:0016772
Blo12g00277 928 PRINTS Bacterial sensor protein C-terminal signature 556 566 IPR004358 GO:0016310|GO:0016772
Blo12g00277 928 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 447 611 IPR003594 -
Blo12g00277 928 ProSiteProfiles Histidine kinase domain profile. 342 613 IPR005467 -
Blo12g00277 928 SMART HKATPase_4 447 613 IPR003594 -
Blo12g00277 928 SUPERFAMILY CheY-like 787 926 IPR011006 -
Blo12g00277 928 Pfam His Kinase A (phospho-acceptor) domain 335 400 IPR003661 GO:0000155|GO:0007165
Blo12g00277 928 Pfam Response regulator receiver domain 790 922 IPR001789 GO:0000160
Blo12g00277 928 Coils Coil 312 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00277 Blo-Chr12:16640388 Blo16g00087 Blo-Chr16:2245073 1.10E-14 dispersed
Blo01g01429 Blo-Chr1:53123294 Blo12g00277 Blo-Chr12:16640388 4.41E-51 transposed
Blo02g00136 Blo-Chr2:1157458 Blo12g00277 Blo-Chr12:16640388 0 transposed
Blo11g00531 Blo-Chr11:4911356 Blo12g00277 Blo-Chr12:16640388 1.21E-10 transposed
Blo11g00965 Blo-Chr11:21758860 Blo12g00277 Blo-Chr12:16640388 0 transposed
Blo01g00163 Blo-Chr1:2193629 Blo12g00277 Blo-Chr12:16640388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12982 PF03924 CHASE 2.70E-35 CL0165 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00277 K14489 - tcc:18608973 1381.31