Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00279 ATGCTCGTACGGGGTTCAACCTACTCTGCGTCAAGCTCAGACTCTACGGACAACGCTCAAATGATGCTCGTATGGAATTCCTCCTCCGTCAACTCGCCGGACGCCGAGCTTGGAGACGACGATGCTCGAACGACGATCGTACAGAGTTCCTTCTTTGATATGACAGAGTTGAAAAAAAATTCTGCTGTCGATGCTGAATTAAGGGACCCTGATGCTATTCTCAATCTACTGAAATTTCATCTACACCGAGCCCAACAAAAAATGGTAGTTTTGGCTAACAAACACAGGATAGAAGTGATTCTTGATGAAAGAGATTTTGTCTATTTGAAACTGAGACCATATAGACAAAATTCGTTGGGCAACAACGGTAGTGTCAAACTTGCGACCAAATTTAAAATCATTCAAAGAATCGGGAAAGTAGCTTATAAGCTTAAACTGCCGGATGCATCAGCAATTCATCCGGTATTTGTTGGAAATGTTGAAGCATTGAATTGTTACTATGTGCATGGGGAGACAAACCCCAATTTTCAGAGACGTAGCTATTGGATGCTGGATCCGTTATATGATTACATCGTTCTTGTACATTATAGAAAGATTAGTGAGGGAAGGCCCATTGGTGGATCCAATTCACAACTGACTCCTGAATCATCTACTCCCGTCAATCAGAGTCCTACATATTCTTCTCCAAATCACACCACTGCCTCTGATCATTCTCACAATTTATTGAGTTCAAGCTCTGTAGACTTTAGTTCTGAAACAATTACCTTGAATGGAGGGAATGAATTTGTGAGGCTAGAAGAAACTTTAGATATGTGTCATGCTCTGAAAAAAATTGAGGCGCTATTAAGTTTGGATGAGAACAGTTGCGAAGACATCAATACATTTTCCAATGATATTGATCATTCAAATTTTTCTGACCCTTTGGCAAATGAAGAGGAAATACCAAAAATTGATCAATATGTAACTTTTCAGGGACAAGAATATACTGCACATGACCAATGTCTTGGTGGCCCTATAGGGATTCAAGGTGATTTCAATGTGCTGCAAACATCAGTAGCTTGCTGTGTTAATGAGTTCGTCTTCACAGGTGATTGGAGTAGCCATCTCCCAGAAATATCAGCCCATGACTCTTTTTCAGAGGATAAAAAATCTTTATCATGGAAAGAGGTGTTAGAATCTTGTAAGACTTCATCGTGTCTTGACGAACGGGATGAACAGTTTCACCTACTTGATGAAAATGAAAGGCTTGCATCTTTGACAAAGGTCAGTACAGTGGATGAGCATGAAGAATGTCAGTTTCTGGGATCGAACGGAAATATTGCCGGCAACTCCTCTTTTTTTCTTGGACGCTGTGAATTTCCTCCATATGCTTCTGGTGTAGATACTCAAAATATCAACTATGACTATTACACTTCGTTTTTTGGCCAAGGTCAAGAAGTGCCTCTTGCTGCAGCTTCAACATGGATGACCATTGCACAAAAGCAAAAATTTACTATCCAAGAAATATCACCTGAATGTGGCCTTGCTGAAGAGGCAACAAAGGTCATTATTGTTGGATCTTTTCTCTGTGATCCATCAGAATGTCAATGGGCTTGTATGTTTGGAGACATTGAAGTTCCAATTCAGATTGTTCAAAATGGTGTTATTCGTTGTGAAGCACCTCCATGCCTTCCTGGAAAAGTAACTCTCTGCATTACCTCTGGCAATAGGGAGTCTTGTAGTGAACTAAGAGAGTTTGAATACAGAGCTAGCACCAGTGTTCAGGCAACAGAAGCTACTAAGAGCACTGAAGAGTTGTTATTACTTGTCAGATTTGCGCAGCTGCTTCTGGCTGACTCTTCAAATCGAGATGTTCAGCCAGGTGACAACGGAGCTTCTGAATTCATAAGAAAATCAAAAGCTCCCAATGATTCATGGGAACACATGATGCAATCTCTTTTAAGTGGTAGTGGAACTTCGTCTGGTACCATTGGTTGGCTTCTACAAGAGCTTCTGAAATACAAATTTCAGCAATGGATTTCTTCTAGAATTAAAGATGGAGTTGATGAGACTTGTTGCCTGTCCAGAACAGAACAAGGAATAATACACATGATTGCTGGGTTGGGATTTGAGTGGGCTTTACACCCAATTCTCCGTTGTGGTGTGAATATAAATTTTCGCGATATCAAGGGCCGAACTGCTCTACACTGGGCTGCAAGCCTGGGAAGGGAGAAAATGGTCGCAGTACTTATAGCTTCTGGTGCATCACCTGGAGCAGTGACTGATCCAAGCTCAGTAGATCCAATTGGCAAAACTCCAGCATCTGTTGCTGCTACTAGTGGACATAAGGGACTCGCAGGCTATCTTTCTGAGGTTGAACTAACCAGCCATCTATCTTCTCTCCAACTTGCAGAGAGCGAGCTTTCTAAGCAATCTGCTGAGGTACAAGCAGAAATGACAGTCAACAGCATCACAAAATGTAGTCTCCCTTTAGATGAAGATGAGGTCTTCCTTAAAGGTACATTAGCTGCAGTGAGGAATGCAGCTCAAGCTGCTGCGCGGATTCAATCTGCATTTCGTGAACATTCTTTTAGAAAGCGGCAACAAAGAGGACTAGGTTCTAGATCTAATAGTATCAATGAGTATGGTATTAGTACAAATGACATTCAAGAACTTTCAGCTCTATCAAAACTAGCCTTTCGCCATCCTCGTGATTTAAATTCAGCAGCATTGTCTATACAAAAGAAGTATCGAGCTTATAAAGGTCGTAAAGATTACTTGTCATTTCGCCAGAAGGTTGTTAAGATTCAGGCTCATGTGAGGGGTTATCAGGTCAGAAAGCATTACAAATTAATATGTTGGGCTGTTGGCATTATAGATAAGGTAGTGCTGAGGTGGCGAAGGAAAGGGGCTGGTTTGAGAGGTTTCCGGCATGATAAAGACTTCATTGATGAGAGTGAAGATGAAGACTTTCTCAAGGTATTCCGTGAACAGAAGGTCCAGGGGGCCATTGATGAGTCCATTTCTAGGGTCCTATCTATGGTTAAATCTTCGGAGGCTCGCCAACAGTATCATCGCGTGCTTGAAAGATACCGTTCAGCTAAGAAGTTCGAATTGGTAACCCTCGCTATCGAAAAGCTAATGGAGGAGAACAGAAATGATGAAGCTTCAGAAAACGGCGACGACCGACTGCTTCTCTCCAGATTACTCTCTCAGTTGGTGAAGCAACGGGAAGGTTCATCAGGTTCAGGTTCAGGTTCAGGTTCAGGTTCAGCGGAATCAAAGGAGATAGCATTTGCTGCAGATGAACAAACGGAGGCCGCGATGAAAGGGGCCAGCGAGGAGGTCGATATTGGGAAAGAAGAAATAGTTAAGGAGCTGAAGAAGCTAAGAAAACAGAATTTTGTAACTCACTGTCTTCTGTCAGTGATGATCGTCGTGACAGTGGCTTGGCAGCTCTCTGAGGTTTCCCTGATTCTCAAAGTGAAGAATAGCGTGAGCAATCCTTTCCAGACGTTGGGTGGGCTGCTGAGAATGATGCTGAAACGGCCTGAAATCCTTGGCGTGGAAGAAGACAAGAGTTCATCGTCGTCGTCTTCAAAACAAAACCAGAGTGATCCTGCAAGTGCACTTCCTCCTCTCAGACTTCCAGAGCTACCCATTGTGCAGCTACCAGATTTAATCTTTGATGCTGAAAAGCACTGA 3684 42.54 MLVRGSTYSASSSDSTDNAQMMLVWNSSSVNSPDAELGDDDARTTIVQSSFFDMTELKKNSAVDAELRDPDAILNLLKFHLHRAQQKMVVLANKHRIEVILDERDFVYLKLRPYRQNSLGNNGSVKLATKFKIIQRIGKVAYKLKLPDASAIHPVFVGNVEALNCYYVHGETNPNFQRRSYWMLDPLYDYIVLVHYRKISEGRPIGGSNSQLTPESSTPVNQSPTYSSPNHTTASDHSHNLLSSSSVDFSSETITLNGGNEFVRLEETLDMCHALKKIEALLSLDENSCEDINTFSNDIDHSNFSDPLANEEEIPKIDQYVTFQGQEYTAHDQCLGGPIGIQGDFNVLQTSVACCVNEFVFTGDWSSHLPEISAHDSFSEDKKSLSWKEVLESCKTSSCLDERDEQFHLLDENERLASLTKVSTVDEHEECQFLGSNGNIAGNSSFFLGRCEFPPYASGVDTQNINYDYYTSFFGQGQEVPLAAASTWMTIAQKQKFTIQEISPECGLAEEATKVIIVGSFLCDPSECQWACMFGDIEVPIQIVQNGVIRCEAPPCLPGKVTLCITSGNRESCSELREFEYRASTSVQATEATKSTEELLLLVRFAQLLLADSSNRDVQPGDNGASEFIRKSKAPNDSWEHMMQSLLSGSGTSSGTIGWLLQELLKYKFQQWISSRIKDGVDETCCLSRTEQGIIHMIAGLGFEWALHPILRCGVNINFRDIKGRTALHWAASLGREKMVAVLIASGASPGAVTDPSSVDPIGKTPASVAATSGHKGLAGYLSEVELTSHLSSLQLAESELSKQSAEVQAEMTVNSITKCSLPLDEDEVFLKGTLAAVRNAAQAAARIQSAFREHSFRKRQQRGLGSRSNSINEYGISTNDIQELSALSKLAFRHPRDLNSAALSIQKKYRAYKGRKDYLSFRQKVVKIQAHVRGYQVRKHYKLICWAVGIIDKVVLRWRRKGAGLRGFRHDKDFIDESEDEDFLKVFREQKVQGAIDESISRVLSMVKSSEARQQYHRVLERYRSAKKFELVTLAIEKLMEENRNDEASENGDDRLLLSRLLSQLVKQREGSSGSGSGSGSGSAESKEIAFAADEQTEAAMKGASEEVDIGKEEIVKELKKLRKQNFVTHCLLSVMIVVTVAWQLSEVSLILKVKNSVSNPFQTLGGLLRMMLKRPEILGVEEDKSSSSSSSKQNQSDPASALPPLRLPELPIVQLPDLIFDAEKH 1227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16649107 16668362 - BLOR04298 Blo12g00279 67540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00279 1227 Pfam CG-1 domain 157 198 IPR005559 GO:0003677
Blo12g00279 1227 MobiDBLite consensus disorder prediction 1069 1085 - -
Blo12g00279 1227 Gene3D - 898 946 - -
Blo12g00279 1227 Gene3D Immunoglobulins 492 586 IPR013783 -
Blo12g00279 1227 Gene3D - 633 788 IPR036770 -
Blo12g00279 1227 SMART CG_1_2 90 200 IPR005559 GO:0003677
Blo12g00279 1227 ProSiteProfiles Ankyrin repeat profile. 723 755 IPR002110 GO:0005515
Blo12g00279 1227 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 157 1028 - -
Blo12g00279 1227 SUPERFAMILY E set domains 498 582 IPR014756 -
Blo12g00279 1227 ProSiteProfiles Ankyrin repeat region circular profile. 723 749 - -
Blo12g00279 1227 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 157 1028 - -
Blo12g00279 1227 MobiDBLite consensus disorder prediction 1182 1207 - -
Blo12g00279 1227 ProSiteProfiles IQ motif profile. 899 928 IPR000048 GO:0005515
Blo12g00279 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 951 IPR027417 -
Blo12g00279 1227 Pfam Ankyrin repeats (3 copies) 709 783 IPR002110 GO:0005515
Blo12g00279 1227 SMART ANK_2a 723 752 IPR002110 GO:0005515
Blo12g00279 1227 SMART ANK_2a 762 791 IPR002110 GO:0005515
Blo12g00279 1227 MobiDBLite consensus disorder prediction 1184 1202 - -
Blo12g00279 1227 ProSiteProfiles IQ motif profile. 841 870 IPR000048 GO:0005515
Blo12g00279 1227 MobiDBLite consensus disorder prediction 206 239 - -
Blo12g00279 1227 SUPERFAMILY Ankyrin repeat 691 785 IPR036770 -
Blo12g00279 1227 Pfam IPT/TIG domain 498 581 IPR002909 -
Blo12g00279 1227 ProSiteProfiles CG-1 DNA-binding domain profile. 73 205 IPR005559 GO:0003677
Blo12g00279 1227 MobiDBLite consensus disorder prediction 1069 1088 - -
Blo12g00279 1227 CDD IPT 498 582 - -
Blo12g00279 1227 ProSiteProfiles IQ motif profile. 923 946 IPR000048 GO:0005515
Blo12g00279 1227 SMART iq_5 898 920 IPR000048 GO:0005515
Blo12g00279 1227 SMART iq_5 921 943 IPR000048 GO:0005515
Blo12g00279 1227 SMART iq_5 840 862 IPR000048 GO:0005515
Blo12g00279 1227 Pfam IQ calmodulin-binding motif 924 943 IPR000048 GO:0005515
Blo12g00279 1227 Pfam IQ calmodulin-binding motif 901 919 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00279 K21596 CAMTA; calmodulin-binding transcription activator - qsu:112030013 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00279 Blo-Chr12:16649107 Blo13g00257 Blo-Chr13:11839242 9.52E-11 dispersed
Blo01g00054 Blo-Chr1:683203 Blo12g00279 Blo-Chr12:16649107 1.53E-91 transposed
Blo01g00165 Blo-Chr1:2203598 Blo12g00279 Blo-Chr12:16649107 0 wgd
Blo01g01443 Blo-Chr1:53333028 Blo12g00279 Blo-Chr12:16649107 8.46E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12983 PF12796 Ank_2 1.10E-06 CL0465 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00279 Blo_Chr12 FPKM 0.0 0.153537 1.288833 1.417452 0.342582 0.319741 0.197983 4.372385 4.321767 3.765243