Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00280 ATGAAGCTGAAGAACAAAGGTAAAGTATATCCCTCCCCCGCCTCAACCTCTTCCGCTTCCTGTTCTTCTTCTCCTTCCTTTGATTATGTTCCCGACGGAGACTTCCTCTCCGTTTTGAAGCTTCTTCCAGCTGCCATTCATGCTCTTGCCTCTGCTCTCTCCCTCGAAGACCGCGAGGTCTTGGCGTATTTAATCACTAGGTCTATGAAATCTGCTACTCCATCTTCGACGAGACCAGAATCTAGGAAAAAATCTTCCAAGAGAACAATGGGTGGTGGTTGTGGTAATGGAAGCGGGCATAAGACGCCGATATTTGACTGCGATTGCTTCGACTGCTACCGGAGCTACTGGTTCCGCTGGGACTCCTCCGTTAACCGCGAGCTTATCCACCAGGCTATCGAGGCCTTCGAGGACCAGTTGACCAGCGGCGAGAAGTTGAAGAAGAGTTCCGGAAGGAACAGAAGAAGAGACCGAACGGTTCGCCGGGATCCGGAAAAGCCTGCGAGTATTCAAAGTCAAGACAATCAGGAAAGCGAAGAATGCTCCGTTATACCAGCCCCATCGGGCGAAAGAATCGCTTCATCGTCTCCATTTTGTATGGAAAACGCTGAAGGAGGCGAGACAGGCAACACCAACGAGAAAGAGGAAGTAGCAAAAACAGGGGAGGAAGAGGCCGATGTGTCGGATATCGTACAGATATCGTCTCCGAGCAACAACGAGGGAAATAGTGCCAGAAAGTTGCTAGGTTGGATGCATCATAAATTTCGCCAAAACAGCCGTGAACCACCAAAAGATCCTGCCATAGGGAAACAATCACTTGATGATGAACAATGCGTCTCAAAGCCAAACTTCAAACCTTTCAAACAAGCCAAGAGAGATCAATACCATCGAAAGACTTTTGCTGGTTTTAAAGCAGGAAGAGTGGCAGAGGAATATGAAAAAGATACGCCATATCTAATATCTGACTTTCATGGATTTCTCGCAATTGGAACTCTTGGTTCGGCCGAAGTCCGCAGTGACATAATGAAACCAAGGTTTTCTCTTTCTCTACATGATATAACTGAGGAAGAAAACGAAGTGTCTGAGAATGAAATGAAACTGGATGACATTGAATTAGAGAAAGTACTAGCAGCTGAAAGTAAGGAAGATGGATGGAAAAGATCATCTCATAGAAACAGCCATGCCAGCATGGGAAGAACCAGCCATGCCAGCATGGGAAGAACCAGCCACGCTAGCACAATACACGTCAGTTCGAAGCCAACAGATAGCCACAGAAGCACCACGAATGGAAATTTAGTATGCCAATTCCAAGAATATCTTTGTGGGACAGCAACTGGAGGGACAAGGACGGAGGAAAAAGAAATTAGAACTTCTCCTGGTGATCTCTTTCAGAAGTGTAAATTAGTAGAGAACTCTGGAGCTACATGCAACAAGGACAAGAAACATGCAGACAAGGAAGTAGATAAATCTGCTTTGTATCTGATGACGAAGAAGCTGAAGAAAAAAATGCTCCGTGCTTCTTCAGGGAACTTAGAAGTAGCTGATACGGGAAAACTAGACTCTGCTTCAGCAGGGAAAAAAAGGTTACATAAGATGCTCAGGATGTTTCACAGAAAAGTTCACCCAGAAAACTCAATCACTATAGACAGACTGGATAAGCCACAAAAGAAAGAGAATAAGACTAAAGCAACCCATGATGAAAGTTGCGACATTAAAGACAGAACCCTGGCAGACGAAGACATGATGTTATACTCTAAGATCGCATTTTCAAACCACACCTTACAATGCTACAAGACCCAAGCCAACCCAAAACATTTCACATCGCCCAGCAGTGATTCAAATGGAAATAAGGAGCGGTGGATCAGAACAGATGCAGACTTCGCTAAGATGGAGATGAACGGGAAGAGAGGAGGGTTGATTACAAGGCTCTTCTCGGCCACCAGAGCACCTCCATCGGCGGCCATTAGAGCGCCTTCCACCTTCCAAAACCCTTGCTTAATGCAAAAAGTTTCTTGTGCCAAGAAAGCCGTCGAGGGTTTGCATGAATCCAGCGGGTTATATGGATTGAGGAGTGAAGAAAACGTGGATGTGATGGCTGAAAGTTACATTTGGTGGGGTTTTAAAGGGGAAATAGGAAATTTGGCCCCTGGCCATTTCATGCTTCAGAAAAATAAAGAGGGAGCGAAAGAGAGGAATCGGGAAGAGGAGAAGAAGGAGAACCCGTGGGAGATCGGGGGAGTGTCGGAGCGACAAATCGACATCCGGCAAACGACTGGTGGAGCACTGCCAAAAGTGAAGGAATGGGAGGCTCGAGGTGGGTGTCCTGGCGTGAGTTGCAGAGGAGTGGGAGTACTAGGAGTCCTCTCTGTTGTTCTGTGTTGGATAGAGAGGTTTCAAGGCTGA 2403 46.44 MKLKNKGKVYPSPASTSSASCSSSPSFDYVPDGDFLSVLKLLPAAIHALASALSLEDREVLAYLITRSMKSATPSSTRPESRKKSSKRTMGGGCGNGSGHKTPIFDCDCFDCYRSYWFRWDSSVNRELIHQAIEAFEDQLTSGEKLKKSSGRNRRRDRTVRRDPEKPASIQSQDNQESEECSVIPAPSGERIASSSPFCMENAEGGETGNTNEKEEVAKTGEEEADVSDIVQISSPSNNEGNSARKLLGWMHHKFRQNSREPPKDPAIGKQSLDDEQCVSKPNFKPFKQAKRDQYHRKTFAGFKAGRVAEEYEKDTPYLISDFHGFLAIGTLGSAEVRSDIMKPRFSLSLHDITEEENEVSENEMKLDDIELEKVLAAESKEDGWKRSSHRNSHASMGRTSHASMGRTSHASTIHVSSKPTDSHRSTTNGNLVCQFQEYLCGTATGGTRTEEKEIRTSPGDLFQKCKLVENSGATCNKDKKHADKEVDKSALYLMTKKLKKKMLRASSGNLEVADTGKLDSASAGKKRLHKMLRMFHRKVHPENSITIDRLDKPQKKENKTKATHDESCDIKDRTLADEDMMLYSKIAFSNHTLQCYKTQANPKHFTSPSSDSNGNKERWIRTDADFAKMEMNGKRGGLITRLFSATRAPPSAAIRAPSTFQNPCLMQKVSCAKKAVEGLHESSGLYGLRSEENVDVMAESYIWWGFKGEIGNLAPGHFMLQKNKEGAKERNREEEKKENPWEIGGVSERQIDIRQTTGGALPKVKEWEARGGCPGVSCRGVGVLGVLSVVLCWIERFQG 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16805633 16822874 - BLOR04299 Blo12g00280 67541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00280 800 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 394 427 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 725 744 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 144 168 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 208 225 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 144 225 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 1 24 - -
Blo12g00280 800 PANTHER PROTEIN LAZY 1 246 631 IPR038928 GO:0009630|GO:2000012
Blo12g00280 800 Coils Coil 353 373 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 381 427 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 725 746 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 72 95 - -
Blo12g00280 800 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00280 - - - qsu:111983198 382.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00196 Blo-Chr2:1775380 Blo12g00280 Blo-Chr12:16805633 1.10E-90 dispersed
Blo01g00170 Blo-Chr1:2367290 Blo12g00280 Blo-Chr12:16805633 1.59E-80 transposed
Blo14g00026 Blo-Chr14:175744 Blo12g00280 Blo-Chr12:16805633 1.11E-20 transposed
Blo01g00169 Blo-Chr1:2353156 Blo12g00280 Blo-Chr12:16805633 4.17E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1277 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00189 Cam06g0021 Cec06g0208 Cco06g0203 Clacu06g0206 Cmu06g0199 Cre06g0973 . . . . . Csa04g00302 Chy11g01800 Cme11g02331 . Blo12g00280 . . Bpe14g00800 . . . Sed02g1006 . . . . . . Cpe17g01063 . Bhi12g02436 Tan06g1499 Cmetu06g2578 . Hepe03g1130 . . . . . . . . . Lsi09g01735 . . Cme07g01916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001778 3 3 3 3 3 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00280 Blo_Chr12 FPKM 0.434034 0.860489 0.96039 1.13904 0.923635 1.633395 1.248785 0.737298 0.896346 1.190314