Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00285 ATGGAAAGGTGGCCGCAATCGCGGGCAACACCTCATAAGCCTATAGAAAGACAAATGATGGCAATCTGTACACCCGACCCGTCACCTGGGTTGTCAGCAAGCACGCTCTCCGATGACACAGCCCATAATATGCACCTTGATCAGCCGAATGTTAGCTCGGTTTCAGGCTCTCGTGGCGTCGCGGCTACCACAGAATTAAGTCCATCCTGTTGTTCTATTAAGCTTCAGAGATTATCATCGCCTCAATGCATTTCATCTTCATGGAGCATTCGGCCGTACTCCTTTCGTCTGAATTCTTTTCCCCCTTCGTCTAACCTTTCATCTCGGAGGAAATCTGGGGTTCTTCACTTAGTTCGGGCCAGTGCTGAGGATGCTTCTTTACAATCAAAAGTTACGAATAAGGTATACTTTGATATAAGCATTGGAAATCCAGTAGGGAAGATTGCTGGTAGGATTGTGATTGGATTATATGGGGATGATGTACCCCAAACAGCAGAAAATTTCCGTGCCCTCTGCACAGGAGAGAAGGGCTTTGGGTACAAAGGTAGCTCATTCCATCGTGTAATCAAGGATTTCATGATTCAAGGCGGAGACTTTGATAAGGGAAATGGAACTGGGGGCAAAAGCATATATGGTCGTACATTTAAAGATGAAAACTTTAAATTAACGCATGCTGGACCAGGAGTTGTTAGTATGGCAAATGCAGGCCCAAACACCAATGGTAGTCAGTTTTTCATATGCACTGTTAAGACTCCTTGGCTGGATCAGAGGCATGTTGTGTTTGGTCAAGTATTAGAAGGAATGGACATCGTGAAATTAATTGAGGCTCAAGAGACTGATAGAGGGGACCGTCCCAGAAAGAAGGTGGTTATAAGTGAATGTGGTGAGGTTCCAGTTGTCTGA 903 45.18 MERWPQSRATPHKPIERQMMAICTPDPSPGLSASTLSDDTAHNMHLDQPNVSSVSGSRGVAATTELSPSCCSIKLQRLSSPQCISSSWSIRPYSFRLNSFPPSSNLSSRRKSGVLHLVRASAEDASLQSKVTNKVYFDISIGNPVGKIAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHAGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIEAQETDRGDRPRKKVVISECGEVPVV 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16962520 16975376 - BLOR04304 Blo12g00285 67546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00285 300 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 180 197 IPR020892 GO:0003755|GO:0006457
Blo12g00285 300 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 256 271 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 243 255 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 156 171 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 228 243 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 197 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 Gene3D - 119 299 IPR029000 -
Blo12g00285 300 CDD cyclophilin_ABH_like 134 295 - -
Blo12g00285 300 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 146 296 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 SUPERFAMILY Cyclophilin-like 126 297 IPR029000 -
Blo12g00285 300 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 149 295 IPR002130 GO:0000413|GO:0003755
Blo12g00285 300 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 296 - -
Blo12g00285 300 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 82 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00285 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - vvi:100248997 380.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00788 Blo12g00285 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00593 Blo-Chr1:6546296 Blo12g00285 Blo-Chr12:16962520 2.95E-19 dispersed
Blo04g00554 Blo-Chr4:4779431 Blo12g00285 Blo-Chr12:16962520 5.74E-71 dispersed
Blo06g00788 Blo-Chr6:31181427 Blo12g00285 Blo-Chr12:16962520 4.66E-89 dispersed
Blo11g00446 Blo-Chr11:3949713 Blo12g00285 Blo-Chr12:16962520 2.81E-70 dispersed
Blo12g00285 Blo-Chr12:16962520 Blo14g00083 Blo-Chr14:623631 2.30E-62 dispersed
Blo01g01459 Blo-Chr1:53712756 Blo12g00285 Blo-Chr12:16962520 2.41E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00285 Blo_Chr12 FPKM 1.829114 3.990717 1.298235 1.121428 9.177652 10.312516 9.010333 1.014674 1.141625 1.556591