Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00290 ATGCTAGATTCAATCCTGGCCGTCGATCCAGACGAGGGACGATCCTCGTCGATCCAACGGCCAGCGAATGTCGTACTTCGATTTAAAATTTTGGAGCAGGCGTTGCCGAATCTTCGCCCTGTCTCATCAGCATGGAGAAGTTATTCATCTTCGGCCAAAGAGATTACAGTGAGGGAGGCTCTGAACTCTGCCATTGATGAGGAAATGTCAGCTGATTCTAAAGTCTTTTTAATGGGTGAAGAAGTTGGGGAATACCAGGGAGCTTATAAGATAACGAAAGGTCTTCTGGAGAAGTATGGCCCTGACAGGGTTCGGGATACTCCAATTACTGAGGCTGGTTTTGCTGGAATTGGTGTTGGTGCAGCTTTTTATGGCCTGAAGCCTGTTGTTGAATTCATGACATTTAACTTCTCAATGCAGGTTGGGGATCATATATTTGGGGCAAATCAACTGAGGGGAAAGCTAGCAGACCTCTCGAACATTTGTGATAGAAGGAGGGTAGAAGGAAAAGAAGCTGCAGGAGAGGTTCGTGAGGAATTCAAGTTGGAACTGAGGACTTTTCGCGACAAAGTTTCCCGTGGTTTGGGTTCATTGAAAGCAGACGTTGCATCGCTTCAAACCCTGAAGGTTGATTTGGTGTTGGTGATGGAGTCTCTGACGACATTGAAGGCGGTGTGCAAGGATGTTTGCTTTGGGGCGTCATGCAACAAAGTCCGCACTGGAGTGGGTTTCTCCCTTCGCGCAGGAGCAAGTTCTTCACTTGCTTTTGGAGCGAGAAAACAATGTCTGGAGGAGGAAGTGTTGGATGATGATGGTGTTGTCCAGAACCTTCGTCGGGAGCGTGGTCGGGTCACTGGGAATGTTCACTCGTTTGGAATCGCAAAGAGAGAACGAGATGGAATGGCAAAAAGAAATGTCAAGGAGTGGGAAGAATACGAAAAAACAATAAACAGAAAAGAAAAGTCGGAGGTAGCAAGGAAGGCCGAGACAGAAAAGAAACTTAAGCAAAAAAATAAGAAGAAGGTAGAGACCACAGAGGTGATCGGTGAAAGAGAACCAGCGGCCGAGGTATTTTTTTGCGAGCGACCAGTCTTGTGCGACGAATTGATGACAAACTGCAGGAGAGGAGGAGACGGCTATGATGGGTATGGAGGGACTGGCGATGATGGAAATGGAAGGACCGATGATGGCGGAAATGTGGGAACTGCCGACGGTGGAAATGGAGAAAACTGCTTGACGGTGGAAATGGATGACCTGGCAGAGGAGGAAACAGCAATTGATCACATCATCAATTCTGCTGCAAAATCAAACTATATGTCGGCTGGTAAAATTCCCGTGCCTATTGTCTTCAGAGGACCGAATGGGGCTGCTGCTGGAGTTGGCGCCCAGCATTCTCAGTGTTATGCTGCGTGGTTTGGCTCTTGTCCTGGGTTGAAAGTTTTGGCCCCATACTCATCTGAAGATGCAAGAGGGCTGTTAAAAGCTGCCATTAGGGATCCAGATCCTGTTGTTTTTCTTGAAAATGAGTTATTGTATGGTGAATCGTTCCCTGTTTCAGCTGAAGCTCTGGATTCCAGTTTCACCGTGCCCATAGGAAAAGCCAAGATTGAAAGGGAAGGAAAGGATGTAACAATTACGGCTTTCTCAAAAATGGTTGGCTATGCACTTAAGGCAGCTGAAATACTGGCTAAGGAAGGAGTAAGTGCTGAGGTGATTAATTTGCGGTCTATTCGGCCATTGGATAGATCAACAATCAATGCTTCAGTGAGGAAAACCAACAGGCTGGTAACGGTGGAAGAAGGGTTTCCTCAGCATGGTGTTGGTGCTGAGATATGTACATCCGTTATCGAGGAGAGCTTTGGCTATCTTGATGCCCCAGTTGAGAGGGTTTCAGGAGCTGATGTGCCCATGCCTTATGCTGCCAATCTTGAGAGATTGGCTGTTCCACAGATAGAAGATATTGTTCGGGCGGCAAAGAGGGCGTGCTTCAGAGCTGCTGCACCTTTGGCTGCGACTGGTTAA 2022 47.43 MLDSILAVDPDEGRSSSIQRPANVVLRFKILEQALPNLRPVSSAWRSYSSSAKEITVREALNSAIDEEMSADSKVFLMGEEVGEYQGAYKITKGLLEKYGPDRVRDTPITEAGFAGIGVGAAFYGLKPVVEFMTFNFSMQVGDHIFGANQLRGKLADLSNICDRRRVEGKEAAGEVREEFKLELRTFRDKVSRGLGSLKADVASLQTLKVDLVLVMESLTTLKAVCKDVCFGASCNKVRTGVGFSLRAGASSSLAFGARKQCLEEEVLDDDGVVQNLRRERGRVTGNVHSFGIAKRERDGMAKRNVKEWEEYEKTINRKEKSEVARKAETEKKLKQKNKKKVETTEVIGEREPAAEVFFCERPVLCDELMTNCRRGGDGYDGYGGTGDDGNGRTDDGGNVGTADGGNGENCLTVEMDDLAEEETAIDHIINSAAKSNYMSAGKIPVPIVFRGPNGAAAGVGAQHSQCYAAWFGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEALDSSFTVPIGKAKIEREGKDVTITAFSKMVGYALKAAEILAKEGVSAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDAPVERVSGADVPMPYAANLERLAVPQIEDIVRAAKRACFRAAAPLAATG 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17128144 17140042 + BLOR04309 Blo12g00290 67551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00290 673 MobiDBLite consensus disorder prediction 385 408 - -
Blo12g00290 673 MobiDBLite consensus disorder prediction 318 337 - -
Blo12g00290 673 SMART Transket_pyr_3 55 514 IPR005475 -
Blo12g00290 673 Gene3D - 531 662 IPR009014 GO:0003824
Blo12g00290 673 Coils Coil 325 347 - -
Blo12g00290 673 Pfam Transketolase, pyrimidine binding domain 54 146 IPR005475 -
Blo12g00290 673 Pfam Transketolase, pyrimidine binding domain 425 513 IPR005475 -
Blo12g00290 673 SUPERFAMILY TK C-terminal domain-like 527 661 IPR009014 GO:0003824
Blo12g00290 673 Gene3D - 414 530 - -
Blo12g00290 673 Gene3D - 51 153 - -
Blo12g00290 673 PANTHER DEHYDROGENASE RELATED 425 668 IPR027110 GO:0004739|GO:0006086
Blo12g00290 673 PANTHER DEHYDROGENASE RELATED 30 141 IPR027110 GO:0004739|GO:0006086
Blo12g00290 673 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 424 542 IPR029061 -
Blo12g00290 673 Pfam Transketolase, C-terminal domain 532 654 IPR033248 -
Blo12g00290 673 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 54 146 IPR029061 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00290 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - csv:101220981 449.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00162 Blo12g00290 CCT
Blo01g00162 Blo12g00290 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00010 Blo-Chr7:231696 Blo12g00290 Blo-Chr12:17128144 4.03E-43 dispersed
Blo11g00438 Blo-Chr11:3836990 Blo12g00290 Blo-Chr12:17128144 8.58E-12 dispersed
Blo12g00290 Blo-Chr12:17128144 Blo18g00502 Blo-Chr18:6302049 4.47E-19 dispersed
Blo17g00027 Blo-Chr17:158166 Blo12g00290 Blo-Chr12:17128144 8.79E-08 dispersed
Blo01g00989 Blo-Chr1:27093815 Blo12g00290 Blo-Chr12:17128144 4.75E-10 transposed
Blo04g00988 Blo-Chr4:12703662 Blo12g00290 Blo-Chr12:17128144 5.34E-15 transposed
Blo01g00162 Blo-Chr1:2174932 Blo12g00290 Blo-Chr12:17128144 1.01E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013863 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00290 Blo_Chr12 FPKM 15.288615 15.756706 12.370595 13.550485 17.2911 15.977801 17.831188 11.416629 12.182756 13.062032