Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00316 ATGAGTACAAACTCGGCAGCCAATAACAGCGCCGGATCAGGCGGCAGTGGTAGCTCCGGATCAGGCGGTGGAGGTCCCTGCGGCGCTTGTAAGTTTCTGCGCAGAAAGTGCGTGCACGGGTGCATATTCGCGCCGTACTTCGATTCAGAGCAAGGCGCCGCCCATTTCGCGGCGGTTCACAAGGTGTTCGGCGCAAGCAATGTGTCCAAGCTCCTCCTGCATCTTCCAGTCAACAAGCGACTCGATGCTGTCATAACCATTTGTTACGAGGCTCAAGCTCGCTTAAGAGATCCTGTCTATGGCTGCGTTGCTCACATCTTTGCGCTTCAACAGCAGGTAGTGAATCTACAAGCAGAGCTCTCCTACTTACAAGCACAGCTAGCAACCCTCGAGCTTCCATTGCCGCCTCCACCTCCTCCACCTCCACCATCTCTACTCACTCCGCCGCCACTCTCCATCGCCAACCTCCCATCCTCTATTCCCTCCTCGTACGACTTGTCGACTCTTTTCGATCCAGAGGTTCAACCAGCTTGGACAGTCCAACACCGACTAGTTGAACCACGTCCATTTGGGTCCAGTGGCGGTTCAGCCACCGTTGGTGGTGGTGGGGGTGATCTTCAAGCATTGGCCAGAGAACTTCTTGATAGACATGGCGGTTCAAGACCATGCAATAATGACTCAACATCTCCATCCCTTTCTAAA 702 54.27 MSTNSAANNSAGSGGSGSSGSGGGGPCGACKFLRRKCVHGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHLPVNKRLDAVITICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQAQLATLELPLPPPPPPPPPSLLTPPPLSIANLPSSIPSSYDLSTLFDPEVQPAWTVQHRLVEPRPFGSSGGSATVGGGGGDLQALARELLDRHGGSRPCNNDSTSPSLSK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18573057 18574911 - BLOR04335 Blo12g00316 67577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00316 234 MobiDBLite consensus disorder prediction 1 20 - -
Blo12g00316 234 Coils Coil 106 126 - -
Blo12g00316 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 219 - -
Blo12g00316 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 219 - -
Blo12g00316 234 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Blo12g00316 234 MobiDBLite consensus disorder prediction 189 234 - -
Blo12g00316 234 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Blo12g00316 234 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00133 Blo-Chr1:1828382 Blo12g00316 Blo-Chr12:18573057 8.04E-104 dispersed
Blo05g00396 Blo-Chr5:4898563 Blo12g00316 Blo-Chr12:18573057 2.71E-54 dispersed
Blo06g00409 Blo-Chr6:23612891 Blo12g00316 Blo-Chr12:18573057 4.62E-55 dispersed
Blo12g00316 Blo-Chr12:18573057 Blo13g00804 Blo-Chr13:30805934 3.96E-42 dispersed
Blo09g00352 Blo-Chr9:14137338 Blo12g00316 Blo-Chr12:18573057 1.47E-54 transposed
Blo01g00132 Blo-Chr1:1819924 Blo12g00316 Blo-Chr12:18573057 8.97E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12987 PF03195 LOB 5.90E-38 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00316 K21994 - mnt:21405253 309.301