Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00322 ATGAAAGACACAAAGAGGTGTCGTTTTGGAGAGAAGATATGTTTCCCCAAGGCGGACTTTTCTATTTATTCGTTGCCAAGGGCAAATGGAACTTTAGATTTACTGTCAATTCAGGACGAGGAAACGGACACAGCCATTGAAAGTGGGGAATCGAGAGACTCTGACACGGCTCTAGTCAGCTCCGATTCTCTCTCTCTCTCTCTAGCATGTCCAAATTTATACTTTTCGTCGAATTTACGGAAGTCTGTGTGCTTTGAGTCTCTGAATCCTGATATTGGAATTACAGCGGCAGTCTCAAATCGTTGGCGAGGTTTTGATCTGAGCAAATTTATTATGTTAGCGAATCACCTACAAAATGGGATCGAGACAGCGAAGCTTGTCTGGTCTCGTCTTCCGGAGTCGGAAGACGGGGAACTCGATGAGGTTGGAATCTCGAAGAAGAGCGATGGATGTAGCGTGGAGAGTCTCGATTACGAGGTTATTGAGAATTATGCCTATTGGGAGGAGCAGTCTCAGCGTGGAAGACTTTTGGCTGGTTATTATGTAGTGGTTAAGTGGCTCTTTGCGTTGCTCATTGGCATCGGTACTGGGTTAGCTGCAGTTTTTATAAATATTTCTGTCGAGAACTTTGCTGGATGGAAGTTTGCATTGACATTTTCCATTATACAAAAATCGTATTTTGCCGGCTTTCTTGTATATGTATTGATCAACCTTGTTTTGGTCTTTTCCTCTGTATATATCATCACACATTTTGCACCAGCTGCAGCTGGATCTGGTATACCTGAAATAAAGGGCTATCTAAATGGTGTTGATATTCATGGTGTTCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGGTCGGTAGGAGGGGGCTTGGCTTTAGGCAAAGAAGGTCCTCTTGTTCATACTGGTGCTTGTATTGCTTCTTTACTCGGACAAGGTGGATCAACGAAATATCATCTGAGTTCTAGGTGGTTGCAAGTATTTAAAAGTGACCGAGATCGCCGTGATCTTGTGACCTGTGGATGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTCGGTGGTGTATTATTTGCCTTGGAAGAAGTTACATCCTGGTGGAGGAGTCAGCTTATGTGGCGTGTATTTTTTACTTCTGCTATTGTTGCTGTTGTTGTCCGAACAGCAATGGGATGGTGTAAAAGTGGAAAGTGTGGACATTTCGGTTCTGGTGGCTTCATAATATGGGATATATCAGATGGTCAAGAGGACTACTCTTTTGGAGAGTTGTTGCCAATGGCTGTTATTGGGGTCATTGGAGGCTTATTGGGTGCGTTATTCAACCAGCTTACTCTTTACATAACTTACTGGCGCAGGAATTTTTTACACAAGAAAGGAAACAGAGTCAAGATAATTGAGGCATGTATTATCTCCTTTGTCACGTCAATTATTTCTTTTGGGCTACCACTTTTGAGAAAATGCAGCCCATGCCCAGTAGTAGATGCTGATTCTGGTATTGAATGCCCAATGCCTCCGGGAGTGTATGGAAATTATGTAAATTTTTACTGCAGTAAGGACGATGAGTACAATGACCTAGCAACGATTTTCTTTAACACACAGGATGATGCGATAAGGAATTTGTTCAGAGCCAAAACCTTTCACGAGTTCAGCGCCCAAAGTTTATTGACATTTTTGGTCATGTTTTATTCTCTAGCTGTTGTGACATATGGCACTGCTGTTCCTGCTGGCCAATTTGTACCCGGTATAATGATTGGATCGACATATGGACGTTTAGTTGGCAAGTTGGTTGTTAATTTTTACCAGAAGCCCAACATTGAAGAGGGAACATATGCTCTTTTGGGAGCTGCTTCTTTTCTTGGAGGTTCAATGCGGATGACTGTGTCCTTGTGTGTAATAATGGTTGAAATCACGAACAATTTGAAACTTCTACCACTTATCATGCTTGTTCTTCTTATCTCAAAGGCTGTTGGAGACACTTTCAACGAAGGACTATATGAGGAACAAGCACAATTGAAGGGAATTCCATTACTGGAGTCTAGACCAAAGTATCAGATGAGGAAGATTGCTGCGAAAGAGGCCTGTGGAAGAAGGGTCATCTCCTTTCCACGTGTTGTGAAGGTTGCAGACATGGTTGAGATTTTGAAAAGCAACAAACATAATGGATTCCCTGTGATAGATCATGGAAGAAATGGGGAAGCACTTGTGATTGGACTCGTTCTTCGAAGTCATCTTTTGGGGCTTCTTCTGTCGAAGGAAGATTTCCAGCATAGTCCACTACCTTCCGATCAAAGGGGATCCAGGCCAATCAGGCATAATTTGAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGCTTATCTATAGATGATATACATCTAAGCTCAGATGACTCTGAAATGTACATAGATCTTTTCCCATTTTTGAATCCCTCTCCATACATCGTTCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCAGGCAACTAGGTCTAAGACACATATTTGTTGTCCCTCGTCCTTCTCGCGTTGTTGGTTTAATTACAAGGAAGGATTTGTTGATTGAGGATAATGACGATTCAGACACAGTGGAACTCCAATCGACCAGTGTAAGGTCTCTATGA 2643 42.19 MKDTKRCRFGEKICFPKADFSIYSLPRANGTLDLLSIQDEETDTAIESGESRDSDTALVSSDSLSLSLACPNLYFSSNLRKSVCFESLNPDIGITAAVSNRWRGFDLSKFIMLANHLQNGIETAKLVWSRLPESEDGELDEVGISKKSDGCSVESLDYEVIENYAYWEEQSQRGRLLAGYYVVVKWLFALLIGIGTGLAAVFINISVENFAGWKFALTFSIIQKSYFAGFLVYVLINLVLVFSSVYIITHFAPAAAGSGIPEIKGYLNGVDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMAVIGVIGGLLGALFNQLTLYITYWRRNFLHKKGNRVKIIEACIISFVTSIISFGLPLLRKCSPCPVVDADSGIECPMPPGVYGNYVNFYCSKDDEYNDLATIFFNTQDDAIRNLFRAKTFHEFSAQSLLTFLVMFYSLAVVTYGTAVPAGQFVPGIMIGSTYGRLVGKLVVNFYQKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDTFNEGLYEEQAQLKGIPLLESRPKYQMRKIAAKEACGRRVISFPRVVKVADMVEILKSNKHNGFPVIDHGRNGEALVIGLVLRSHLLGLLLSKEDFQHSPLPSDQRGSRPIRHNLSEFVKPASSKGLSIDDIHLSSDDSEMYIDLFPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHIFVVPRPSRVVGLITRKDLLIEDNDDSDTVELQSTSVRSL 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18725555 18734213 + BLOR04341 Blo12g00322 67583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00322 880 CDD CBS_pair_voltage-gated_CLC_euk_bac 704 860 - -
Blo12g00322 880 Gene3D - 685 866 IPR046342 -
Blo12g00322 880 CDD ClC_6_like 154 683 - -
Blo12g00322 880 PRINTS Plant CLC chloride channel signature 159 167 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo12g00322 880 PRINTS Plant CLC chloride channel signature 369 377 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo12g00322 880 PRINTS Plant CLC chloride channel signature 401 408 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo12g00322 880 PRINTS Plant CLC chloride channel signature 383 393 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo12g00322 880 PRINTS Plant CLC chloride channel signature 531 547 IPR002251 GO:0005247|GO:0006821|GO:0016020
Blo12g00322 880 Pfam CBS domain 700 755 IPR000644 -
Blo12g00322 880 Pfam CBS domain 814 860 IPR000644 -
Blo12g00322 880 Pfam Voltage gated chloride channel 241 663 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 ProSiteProfiles CBS domain profile. 813 869 IPR000644 -
Blo12g00322 880 PRINTS Chloride channel signature 348 367 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 614 630 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 579 599 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 670 684 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 253 270 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 284 303 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 PRINTS Chloride channel signature 632 651 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Blo12g00322 880 SUPERFAMILY Clc chloride channel 163 685 IPR014743 -
Blo12g00322 880 SUPERFAMILY CBS-domain pair 689 860 IPR046342 -
Blo12g00322 880 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 115 879 - -
Blo12g00322 880 SMART cbs_1 703 755 IPR000644 -
Blo12g00322 880 SMART cbs_1 816 864 IPR000644 -
Blo12g00322 880 Gene3D Clc chloride channel 178 684 - -
Blo12g00322 880 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 115 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00322 Blo-Chr12:18725555 Blo16g00894 Blo-Chr16:36620751 0 dispersed
Blo12g00322 Blo-Chr12:18725555 Blo02g01193 Blo-Chr2:43656855 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00322 K05016 - jre:109005860 1324.3