Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00326 ATGAGTCTGGATTTGATCCTCGTTCTATTTTTTCTTCAATACTTGTTCTCACCCACCGTTAGTCTTCACCCCCTAGACCCTCTCAGCCTTGATGAACTAAACAAAGTAAGCCTCATTATCCACAATTCCCATCTTGCTGCTTCCCTTCCAAATCTCACTTTTCACTTTGTAGATCTTCAAGAGCCAGATAAACCTGACGTTTTCAGGTGGCTCCGGAGTGACGGTGGGGAGCCGAGGTTCGTCCCGCCCCGCCAAGCCAAAGCTGTGGTTAGAGCCCTCTGTGAGACCCACGAGCTCGTCATCGACTTAGCCAGTGGCTCCATCGTTTCAGACCATGTCTACGCAGGCAATGGCTATCCACCTCTCACTTTTCTCGAGCTTTTCAAAGCAAGCAAACTCCCTCTAAATTATTCAAAATTCAGAAACTCTATCTCCAAAAGAGGATTGAATTTGTCCGAAGTTTCTTGCGTTCCATTTACAATTGGTTGGTTTGGCCAGAAAACATCGAATAGAGCTCTAAAGGTATCATGTTTTTACCGAGGAGGAACCGTAAATGTCTTCTCGAGGCCTATCGAAGGAATCTCTTTATTAGTAGACGTAGATTCAATGAAAATCATCAGCTACACTGATAGACTTCGAGCTCCACTGCCAAAAGCTGAAGGCACCGACTTCCAGCCTTCAAGCCCGCATCTTAACTCCACTTTCTGCAAAAAATCAGAAAAAGGTTTCTCCATTGATGGCCACCAAGTGAAATGGGAGAACTGGGTATTTCACGTAGGTTTCAACGCAAGAGCAGGAGTGGTAATTTCCACAGCTTCAGTTTATGACAGGGAGAAGAAGAAATATAGAAAGGTTTTATACAGAGGGTACGTTTCAGAGACGTTTGTTCCTTACATGGACCCTGCAAAGGAATGGTATTTCAGGACTTTCATGGACGTTGGAGAGTTTGGATTCGGAAGAAGTGCAGAGAGTCTTGTGAGTTTGATTGATTGCCCAGAAAATGCAGAATATATTGACGGGTATTTGAATGGAGCAGATGGGAAGGCTCAGAAGGTGGCTAGGGTTGTCTGTGTTTTTGAAAGAGAGTCTGGGTCAGTTGCTTGGAGACATACTGAAATCAATGTTCCTGGCAAACTGATAAGAAGAGGGGAGGCAGAAAGGAGTTTGGTCGTAAGAATGGTGGCTACTGTTGGAAACTATGATTACGTTCTTGACTGGGAGTTCAAACAAAGTGGCTCCATCATCGTTGGCGTGGATTTGACTGGAGTTCTAGAGATGAAGGCAGAGGCGTACACCAACACCATTCATATAACGGAAGATATACACGGAACCTTCGTTGCCAACAACACCGTCGCCGTTAACCATGACCATTTTCTAGCGTACTACCTCGACGTTGACATCGACGGCGTCAATAACTCCTTCGTCAAGACCAAATTGCAGACGGTGACGATGCCAGACTCCCCGACACAAAGAAAGAGCTACTGGACGGTCGTCACACAAATCGCCAAAACCGAAGCAGCGGCTAGGCTGCGGTTCGGTTGCGTTCCGGGTGAGTTGGTGGTTGTGAATCCTAACGAGAAAACGAGGCTGGGGAACCAGGTGGGTTACCGGCTGATCACTGGAGAGCCGGTTAATTCTCTACTGGCGGATGATGATTATCCGCAAATCAGGGCTTCTTTTACCAAGTATCAAGTCTGGGTGACCCCCTATAACAAGTCAGAGAAGTGGGCTTCGGGTCTGTACACTGATGGAAGCCATGGCGATGATGGCTTAGGCATTTGGACTAAAAGGGATAGAGGAATTGAAAATAAAGACATAGTGATGTGGTACATAGTGGGATTCCACCACATTCCATGCCAAGAAGATTTTCCAGCAATGCCCTCACTTCATGATCTGGATGACACTTTGTACCCTTCCAATACTGGAATCGCCCAGGCTTGCAAGAAGAACATCGAAGATTTTCTTGTGGAAAAATGCGGATTTCCGGAGATTAAAGCTTCGAGTCTCCGAGTTGAACTTTTCAAAACCTATGGCAGCTCTCTCGCTGGTTTACGAGCTTTAGACTATAATATCGATGCCGATGATTACCACAGTTTCGTGCACGGAAGGCTGCCTTACGAGAGCATTAAACCAGATTCCCAGCTACGTAACCTCCTCCTAAGCATAAAGCAAAGGAAAATAATATTCACAAATTCGGATAGGAATCACGCTGATAGGGCATTGGATCGGCTTGGATTGAAAGACTGTTTCGAAAAGATAATCTGCTTTGAAACGATGAATCCAAACCTTTCAAAAGCAAGTCGGCCGAGCGAGTTCCCCGTTGTTCTGAAGCCATCTTTGAACGCCATGAAAATCGCACTCGATGTGGCCCAAGTCGATCCTCGACGCACGCTTTTTTTGGACGACAACGTTCGCAACGTCACTGCCGGGAAAGCTATGGGTCTCTTCACCGTTTTGGTTGGTAGAAACTCCAAGAGCAAAGACGCAGACTATGCATTGGAGACGGTCAACAACTTGCCACAAGTGATCCCAGAGATATGGGAAAGCTCAATGGAGGGTGACGATCACAACAATCGTGCCATCAGCCGGGCCAGAAGCCAAATCGATTCCGTCCTCGCATCTACAGCCGTCGGTGCTTGA 2640 46.59 MSLDLILVLFFLQYLFSPTVSLHPLDPLSLDELNKVSLIIHNSHLAASLPNLTFHFVDLQEPDKPDVFRWLRSDGGEPRFVPPRQAKAVVRALCETHELVIDLASGSIVSDHVYAGNGYPPLTFLELFKASKLPLNYSKFRNSISKRGLNLSEVSCVPFTIGWFGQKTSNRALKVSCFYRGGTVNVFSRPIEGISLLVDVDSMKIISYTDRLRAPLPKAEGTDFQPSSPHLNSTFCKKSEKGFSIDGHQVKWENWVFHVGFNARAGVVISTASVYDREKKKYRKVLYRGYVSETFVPYMDPAKEWYFRTFMDVGEFGFGRSAESLVSLIDCPENAEYIDGYLNGADGKAQKVARVVCVFERESGSVAWRHTEINVPGKLIRRGEAERSLVVRMVATVGNYDYVLDWEFKQSGSIIVGVDLTGVLEMKAEAYTNTIHITEDIHGTFVANNTVAVNHDHFLAYYLDVDIDGVNNSFVKTKLQTVTMPDSPTQRKSYWTVVTQIAKTEAAARLRFGCVPGELVVVNPNEKTRLGNQVGYRLITGEPVNSLLADDDYPQIRASFTKYQVWVTPYNKSEKWASGLYTDGSHGDDGLGIWTKRDRGIENKDIVMWYIVGFHHIPCQEDFPAMPSLHDLDDTLYPSNTGIAQACKKNIEDFLVEKCGFPEIKASSLRVELFKTYGSSLAGLRALDYNIDADDYHSFVHGRLPYESIKPDSQLRNLLLSIKQRKIIFTNSDRNHADRALDRLGLKDCFEKIICFETMNPNLSKASRPSEFPVVLKPSLNAMKIALDVAQVDPRRTLFLDDNVRNVTAGKAMGLFTVLVGRNSKSKDADYALETVNNLPQVIPEIWESSMEGDDHNNRAISRARSQIDSVLASTAVGA 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18812417 18817342 - BLOR04345 Blo12g00326 67587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00326 879 CDD HAD_5NT 631 822 IPR010237 -
Blo12g00326 879 ProSitePatterns Copper amine oxidase topaquinone signature. 389 402 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 SUPERFAMILY HAD-like 631 848 IPR036412 -
Blo12g00326 879 Pfam Copper amine oxidase, N2 domain 23 112 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 Pfam Haloacid dehalogenase-like hydrolase 629 820 IPR041492 -
Blo12g00326 879 Pfam Copper amine oxidase, enzyme domain 241 629 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 629 848 - -
Blo12g00326 879 Gene3D - 122 213 - -
Blo12g00326 879 Gene3D - 22 120 - -
Blo12g00326 879 SUPERFAMILY Amine oxidase N-terminal region 20 119 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 Gene3D - 690 847 IPR023214 -
Blo12g00326 879 PANTHER COPPER AMINE OXIDASE 6 640 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 SUPERFAMILY Amine oxidase catalytic domain 240 640 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 Gene3D Copper amine oxidase, catalytic domain 243 645 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 Pfam Copper amine oxidase, N3 domain 120 213 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 SUPERFAMILY Amine oxidase N-terminal region 118 224 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00326 879 PANTHER PRIMARY AMINE OXIDASE 1 6 640 - -
Blo12g00326 879 SFLD C1.5.3: 5'-Nucleotidase Like 629 848 IPR010237 -
Blo12g00326 879 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 629 820 IPR010237 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00326 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - fve:101308463 909.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01105 Blo-Chr1:39388374 Blo12g00326 Blo-Chr12:18812417 1.74E-73 dispersed
Blo07g01175 Blo-Chr7:31627388 Blo12g00326 Blo-Chr12:18812417 4.79E-78 dispersed
Blo12g00326 Blo-Chr12:18812417 Blo16g01170 Blo-Chr16:40245822 2.38E-67 dispersed
Blo12g00326 Blo-Chr12:18812417 Blo12g00327 Blo-Chr12:18826225 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00326 Blo_Chr12 FPKM 6.273306 5.148847 8.459885 7.315958 7.590047 7.069774 7.357855 22.376516 24.417973 22.785868