Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00327 ATGGTGGAAACCTGCAAGTTCTCTCTCTTTTTCCTCATTTCCCTCCTCTTCGTCTTCCCCACCTATCAACAACAACACCCTCTCGACCCTCTAACTCCCACTGAACTCAACCTCGTTCGAACGATTATCACAAACTCCCTCCCCCTCTCCTCCCAAAACCTCACCTTCCACTACGTCGGCCTCGATGACCCGGACAAACAAGCACTCCTTTCGTGGCTATCGTACCCAGCCGCCTCTCCTCGTTCACCTCGCCTAGCCTTCGTCATTGCCCGGCTGAACCAGACCAGCCGTGAGTTCACTGTAGATCTCGCTGCAAACTCCATTGTTTCCGATCGAGTCTATAATGGCTTTGGCTACCCGGTTCTTACTTTCCAGGAGCAGTTCTCCGCGAACACCTTGCCTCTTACTTACCAGCCGTTTATCGATTCCGTTCGCAGGCGAGGGCTGAAGATCGAGGAGCTCGTGTGTGGAAGTTTCAGCGTTGGGTGGTTCGGCGAGAGGAGGAGGACGAAGAGAATTGTTAAGGTGCAATGCTTTTACTTGGACGGTACGGTCAATGTCTATTTGAGGCCGATGGAAGGAGTAACGGTGACCGTTGATATTGATTCGATGAAAATCTTAGATTTTTTAGATAGATATACGGTTCCCATGCCTAAAGCCAATGGAACCGACTTTAGAGAATCAAAACAAACGCCGCCATTGTTGCCGAGCTTAAATGACATCACTGTGGTTCAACCCAACGGCCCAAGTTTCACCATTGACGGACATTCTATAAAGTGGGCGAATTGGGAGTTCCACCTGGGTTTCGACGCCAGAGCAGGTCCGGTCATCTCTCTGGCATCGATCTACGATCCAGAAAAGGGGGAGCTCCGGCGAGTTTTATACAGAGGGTTTTTGTCGGAGCTTTTCGTTCCCTACATGGATCTAAACGAAGAATGGTACTACCGGACCTTTTTCGACCATGGTGAGTATGGGTTTGGACAATGTGGAGTTCCGCTCCTGCCACTTTCAGATTGCCCGGAAAATGGAGTTTTTATGGACACTTTCATCGCCGGTCCGAACGGGATGCCGGTGAATATGTCCAACACTTTCTGTATCTTCGAACGGATTTCGGGCGATGTTATGTGGCGGCACACCGAGACGTCCATTCCCGGAAGAGTTATTGGAGAGTCAAGGCCGGAGGTGAGCTTGGTGGTGAGAATGGTGGCCGCTGTTGGCAACTATGATTATATAGTTGATTGGGAGTTCAAGCAGAGTGGCTCCATTGTCGCATCTGTCGGACTGACCGGAGTACTGGAGGTACGAGCATCAACCTTTAATCATACAGATGAAATAAGAGAGGAGGTATACGGTACACTGCTCTCAGAAAACACCATCGGGGTGAACCATGATCATTTCATCGTCTACCATCTCGATCTCGACGTGGACGGTGATGCCAACTCCTTCGTCAAGTCCAACTTAAAGACGATCAGAGCCGCTGGTCATAGCAACTCGAGGAGAAGTTATTGGAGGAGGATGAAGGAGACTGCTAAGAGGGAGTCCGATGCGAGGGTCGAGATTGGCTTGAAAGCCACTGAATTGCTCGTTGAAAATCCTAACAAGAGGACTCAAATGGGCAACACCGTCGCCTACCGTTTGATTCCTAAATCCGTGGCCGGCCCCTTGCTGACGGACGATGATTACCCGCAGATTCGGGCAGCGTTCACCAAGTATAATGTGTGGGTCACACCGTATAATAGATCTGAAAAATGGGCCGGAGGACTGTACAGTGATCAAAGCCGCGGGGATGATACTCTGGCCACGTGGAGTAACAGGAACAGGGAAATAGAAAATAAGGACATAGTGGTCTGGTACACCGTGGGATTTCATCATGCACCATGCCAAGAAGATTTCCCTCTCATGCCTACTCTCACCACTGGGTTTGAGCTCAGGCCAACCAATTTCTTTGAGAGGAATCCGGTTCTCAAAGTCCAATCCCCTCACCAAATCAACTTCTCTGAATGCTACAGCCCCCGCCCACCTTCTTCTTATGCTCCCCTTGATTAA 2046 50.1 MVETCKFSLFFLISLLFVFPTYQQQHPLDPLTPTELNLVRTIITNSLPLSSQNLTFHYVGLDDPDKQALLSWLSYPAASPRSPRLAFVIARLNQTSREFTVDLAANSIVSDRVYNGFGYPVLTFQEQFSANTLPLTYQPFIDSVRRRGLKIEELVCGSFSVGWFGERRRTKRIVKVQCFYLDGTVNVYLRPMEGVTVTVDIDSMKILDFLDRYTVPMPKANGTDFRESKQTPPLLPSLNDITVVQPNGPSFTIDGHSIKWANWEFHLGFDARAGPVISLASIYDPEKGELRRVLYRGFLSELFVPYMDLNEEWYYRTFFDHGEYGFGQCGVPLLPLSDCPENGVFMDTFIAGPNGMPVNMSNTFCIFERISGDVMWRHTETSIPGRVIGESRPEVSLVVRMVAAVGNYDYIVDWEFKQSGSIVASVGLTGVLEVRASTFNHTDEIREEVYGTLLSENTIGVNHDHFIVYHLDLDVDGDANSFVKSNLKTIRAAGHSNSRRSYWRRMKETAKRESDARVEIGLKATELLVENPNKRTQMGNTVAYRLIPKSVAGPLLTDDDYPQIRAAFTKYNVWVTPYNRSEKWAGGLYSDQSRGDDTLATWSNRNREIENKDIVVWYTVGFHHAPCQEDFPLMPTLTTGFELRPTNFFERNPVLKVQSPHQINFSECYSPRPPSSYAPLD 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18826225 18829029 - BLOR04346 Blo12g00327 67588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00327 681 SUPERFAMILY Amine oxidase N-terminal region 118 225 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 Pfam Copper amine oxidase, enzyme domain 242 655 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 Gene3D Copper amine oxidase, catalytic domain 251 667 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 SUPERFAMILY Amine oxidase N-terminal region 24 117 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 Pfam Copper amine oxidase, N2 domain 26 113 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 Gene3D - 24 120 - -
Blo12g00327 681 Gene3D - 121 215 - -
Blo12g00327 681 Pfam Copper amine oxidase, N3 domain 120 213 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 PANTHER AMINE OXIDASE 1 666 - -
Blo12g00327 681 SUPERFAMILY Amine oxidase catalytic domain 230 667 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Blo12g00327 681 PANTHER COPPER AMINE OXIDASE 1 666 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00327 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - qsu:112038115 978.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00395 Blo-Chr3:10157718 Blo12g00327 Blo-Chr12:18826225 0 dispersed
Blo12g00327 Blo-Chr12:18826225 Blo16g01170 Blo-Chr16:40245822 3.54E-79 dispersed
Blo12g00326 Blo-Chr12:18812417 Blo12g00327 Blo-Chr12:18826225 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00327 Blo_Chr12 FPKM 2.632371 4.657031 5.877504 6.599466 19.021057 12.028662 16.739414 0.0 0.226026 0.0