Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00334 ATGGAAACCGGTGGTGATAAATGGAATGAAGAGTACTCTGTTCTAGAAGAGAAAGGAGACATTGGTTTTATAGACTACCAAGATGATAGCTCTGTTTGCAGTTACAATCTTATCGATGAAGGTCCCATTGTTATTTCAGCTCCATTTGCTTTGGTAAATGGAATGCCCCAAGCAGTATGTGTAGGAGATTTGGCCACTGACTCCATTACAATCAAGAACACAACTTCTGATCCAGTTGATTTATGGGGAATTAGTATTTACGCATCAAATCCAGACAACTCTTTCGTACTCTCCTTAATAGAACCCCCACGTTCAGATTCTGATATTGACGCTATCCAAGATTTTCTCGAGTCTTTTTCTTTGGATGATAGAATGCTTCCACCAGGTGAGACGCTGACCGTATGGTTATCATGCAAACCAAAGGATATTGGCTTGCACACTACGGTAGTGCACTTTAATTTGGGGGGTGAAAAGATAGAACGAATTGCTTTCCTTTTGGTTGATGATAAAATTTCCCAGTCATTGGCTTCTAAAAAACCATATTCAAGAGGAATGAAAAAAAAGTATGTTCCTGTTGATTCATTTGTTCCTGGTTCACGTCCTGCCATGACAAAAGAGCGGAAGTTTAGAAACAGGCTTCCTCCATATGACATTCCAAAGGACATCAGAGAATTGCTCGAGAATAGGCAGATTCCAAATGATGTTATGAAAGGACTTACAAGGGAAACTTATGCCACATACTTCAAAACTTTATTGATCATGGAAGAGATACAATTGGAGGATGACATGAGAACTTATAACTTGGAAGGTGTTTTCATGAAAAAGCGTAACTACTTTTTATCCTTAGAAGTTCCTGGTCTAGCCGAGAGAAGACCTTCTCTTGTCCATGGAGATTGTATTCTCGCCACCCTGTCTTCAAGAGCAAATGACCAATCAAGTTCATATCAGGGTTATATTCATCATGTTGAGGCTGATGAAGTGCACCTGAAGTTTAATCCGGATTTTCATTGTCATCATAGAGATGACAATTTATACAATGTTGAGTTCACATACAATCGAATTAACATGAGAAGGTTATATCAAGCTGTTGAGGCTGCCCAAAGTTTGGCTCCAGAATTTCTATTTCCATCACCCCGAAGGAGACAAGTTAAAAGAACTCGATTCCAACCAATATCTTGTAATCTTAATGAGGAACAGATGAGCTCAATTGAAATGATACTTGGCTGCAAAGGCGCTCCACCTTATTTAATCCATGGACCTCCTGGAACTGGGAAGACTTTAACGATAGTTGAAGCTATCCTTCAGCTCTATACAACACAACAGAATGCCCGGTTGCTTATCTGTGCACCTTCGAATAGTGCAGCCGACCATATTTTGGAGATACTTTTGAATGAAAAGACGATTGAACTACAAGAAAATGAAATATTTAGGCTCAATGCTACGACTCGTCCATATGAGGAAGTCAACCCTGATCATCTTCGATTTTGTTTCTTAAATGAGCATATCTTCACATCCCCTCCACTTAGAGCTCTCTTGCGCTACAGAATTGTTATTTCAACGTACATGAGTGCCTCTCTTCTTTATGCAGAAGGAATGAAGAGGGGTCATTTTTCTCATCTTTTCTTGGACGAAGCTGGCCAAGCTTCAGAGGCCGAAACTATGATCCCTATATCTAACCTGTGTCTGAGAACTACAACTGTCGTTCTTGCTGGAGATCCAAAGCAGTTAGGTCCAGTGATATACTCCAAAGAAGCAAATGCTCATGGGTTAGGAAAATCATATTTAGAGAGGTTGTTTTCATGTGAATTCTATGAATATGGGGATGAAAATTACTTGACAAGGTTGATAAAAAACTACAGATGTCATCCGGCTATACTTCATCTTCCTTCAAATTTGTTCTATGGTGGGGAATTACTTGCGTGTAAGGATGCGGCAAATTCTCTCTCAACTAAAGTTGATATCATGAAACTCCTTCCCAACAAGGAGTTCCCAGTTCTTTTCCTTGGTATCCAAGGCTGTGATGAGAGAGAGGGAAATAACCCTTCATGGTTTAATAGGATCGAGGCAAGCAAGGTTGTGGAGATTGTCAAAAAGTTGACAGCGACTGGAAATTTAGGTGAGGAAAGTATTGGGGTAATAGCCCCTTATCGGCAGCAAGTTCTGAAACTGAAAAAAATTTTTGAAAATTTGGATATGCTTGATATTAAGATTGGGAGTGTGGAACAGTTTCAAGGACAGGAGAAGCAAGTTATTATCGTTTCTACCGTCCGATCAACGGTTAAACACAATGAGTTTGATAGAACGTACTGTTTGGGTTTCTTGAGCAATCCAAGAAGGTTAAATGTGGCCGTTACCAGAGCGAAATCTCTTCTAGTCCTAATTGGGAATCCACATATTATCAATCGGGATACTTATTGGAACAAACTATTGTGGTATTGTGTCGACAACAACTCCTATCAGGGTTGTCCACTCCCGGAAAGAGAGGATCATCTTATCGAGACCAGCGAGAAAAAAGAAGACTGGAATCACGATGGAGAAGGCACTGTACAAAACTGGAACGACAATGGAGCAGATTGGAACGACAATGGAGGAGAGGGGAAAGCGAATGGGGGAGAAGGCGGAGGGGAGTGGAGTGACAATGAAGTAGACTGGAATGCAAAAGGAGGAGAAAACTGTACAGGTAGCAATGCTGTGGCTGAGATTCCCAAGCCAGTTACTGATGAAGCAGAATGGTCTGATGGTTGGAAGTGA 2751 40.75 METGGDKWNEEYSVLEEKGDIGFIDYQDDSSVCSYNLIDEGPIVISAPFALVNGMPQAVCVGDLATDSITIKNTTSDPVDLWGISIYASNPDNSFVLSLIEPPRSDSDIDAIQDFLESFSLDDRMLPPGETLTVWLSCKPKDIGLHTTVVHFNLGGEKIERIAFLLVDDKISQSLASKKPYSRGMKKKYVPVDSFVPGSRPAMTKERKFRNRLPPYDIPKDIRELLENRQIPNDVMKGLTRETYATYFKTLLIMEEIQLEDDMRTYNLEGVFMKKRNYFLSLEVPGLAERRPSLVHGDCILATLSSRANDQSSSYQGYIHHVEADEVHLKFNPDFHCHHRDDNLYNVEFTYNRINMRRLYQAVEAAQSLAPEFLFPSPRRRQVKRTRFQPISCNLNEEQMSSIEMILGCKGAPPYLIHGPPGTGKTLTIVEAILQLYTTQQNARLLICAPSNSAADHILEILLNEKTIELQENEIFRLNATTRPYEEVNPDHLRFCFLNEHIFTSPPLRALLRYRIVISTYMSASLLYAEGMKRGHFSHLFLDEAGQASEAETMIPISNLCLRTTTVVLAGDPKQLGPVIYSKEANAHGLGKSYLERLFSCEFYEYGDENYLTRLIKNYRCHPAILHLPSNLFYGGELLACKDAANSLSTKVDIMKLLPNKEFPVLFLGIQGCDEREGNNPSWFNRIEASKVVEIVKKLTATGNLGEESIGVIAPYRQQVLKLKKIFENLDMLDIKIGSVEQFQGQEKQVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRLNVAVTRAKSLLVLIGNPHIINRDTYWNKLLWYCVDNNSYQGCPLPEREDHLIETSEKKEDWNHDGEGTVQNWNDNGADWNDNGGEGKANGGEGGGEWSDNEVDWNAKGGENCTGSNAVAEIPKPVTDEAEWSDGWK 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19043606 19047247 - BLOR04353 Blo12g00334 67595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00334 916 Pfam AAA domain 591 797 IPR041679 -
Blo12g00334 916 PANTHER RNA HELICASE SDE3-RELATED 5 849 - -
Blo12g00334 916 CDD DEXXQc_Helz-like 395 620 - -
Blo12g00334 916 Gene3D - 619 830 IPR027417 -
Blo12g00334 916 Pfam AAA domain 395 490 IPR041677 GO:0004386
Blo12g00334 916 Pfam AAA domain 511 583 IPR041677 GO:0004386
Blo12g00334 916 CDD SF1_C_Upf1 621 813 IPR041679 -
Blo12g00334 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 811 IPR027417 -
Blo12g00334 916 MobiDBLite consensus disorder prediction 853 916 - -
Blo12g00334 916 PANTHER DNA2/NAM7 HELICASE FAMILY 5 849 IPR045055 -
Blo12g00334 916 Gene3D - 314 606 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00334 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1222.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00261 Blo-Chr2:2507135 Blo12g00334 Blo-Chr12:19043606 1.15E-28 dispersed
Blo12g00334 Blo-Chr12:19043606 Blo11g00743 Blo-Chr11:10022670 1.86E-33 dispersed
Blo12g00334 Blo-Chr12:19043606 Blo03g00825 Blo-Chr3:33841142 1.37E-49 transposed
Blo12g00334 Blo-Chr12:19043606 Blo19g00160 Blo-Chr19:6420274 1.39E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00334 Blo_Chr12 FPKM 16.263058 20.061909 44.856541 40.11203 16.319595 13.118058 15.505561 20.742432 19.645569 24.89724