Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00335 ATGGACGGCCCCGATAGAACCCAGCTCGGAGCTGCTTCAGTTTCTAAAATTGAGAATTCTCCTGTTTTCAACTACATTAATAGTCTCTCTCCTATCAAGCCCTTGAAGGCCATACACACTAATCATGCGTTCAACTCGCCTAGTTTGAGAGCCGTTACATCTGTTTTTTCATCACCACATGCCAATTCTGCTAGAGAATCTAGTCTCTTGCAAGGGCATAGTTATGCAGGTAGATCAAAACTCATTTCTCCTCCGAATGGGAATAAATTTCACAAAAACCCCTGTGTATACGCAAGTGTGGATGAACTGAATGGTAACTCTGCCGTAGTACATGGACATTTCAATACTCGTGTTTCCACTATCAATGCATCTGATGAAACCCCAAGTAGATATTTAAAATCTACAATTGATGTTTCAAAAATGACGGCTTACACTTGTGGCAGCCCTGGTTATAGTCCAAGTAGTAATCATTTTGGTATTCTATCAGATTGTAAGTCAGAATCAGGTGGCACCTCATGTTTACTGGTACCTTATGTCCAAGAAGACTCTAAAAAAGGTTCATATGAAAGGGAAAAGAATTTAGTCTGCCCCATTGAACAGAGAAAAGAAGGAACCAGACATGGCTTGGAAAGTTTGATTTATGATACTGGCAACCCATTAATTTTTACTTCTCCAGATAGTTCAGAGTCTATGACATTGATTCAGGATTCACTAGACCTAAAGACAAATTTTTCTAGAGGTCTTATGTCACAGTTAGCATCCAATGGGCAAAATTATATGCATGAACTGCCATGTGTTGATCACTGGCCAGATCATTCTTCTCTACTCAAAGACACGAATGAGCTAAACAAAATAGTGCCGACTCTTTATAATTATGCATATTCTAATCGAGGTATGCATATCACAGCTGAGGAAGAAATATATAATGAGCTAGGGGGTTTGACAACTCCTGCATCCAGTTTGCATAATGCTACATGGAGGCGTGGTCTAGATTTTAAGATGCCAGGAGATTGTCGAAAAGGTACAGAAGATGGTAAAAATTCTTTTTCTTCTATCCTATCTCAATCAGATGAGAAGTTTATTGCCAATAATAAACAAGTGGTACGTCCTATGTCTTCTGGTCACTTGTCTTTGTGTATTTTACCGGGAATTGGATTGCATTTGAATGCTTTGGCAAAGAATTTGAAGGATTGCAAAAACGCTAGTGAAGATTCTGGAAGACAATCAACCCTTCCCTGCACTACTGGCCTATCACATATCTCCTCAACTTCTCATGAACCACTCTTCACTTCAGCTGATTCTGAAAGAGAGATGGATCCTGCTGATAATAGGATTAAAATGGAGGAAGACGCTCCTCAAGCATCTCACAATGTACTCAATGAAGACAGGCTTAGGTTGGACCTAGCTGGAGAACACGAGACATGCAAAAGATGCAACTGTAAGAAGTCAAAGTGTTTGAAACTGTTTCCTATAGAGTTAGTCACTCATCCCAACGACCCCTCCATCCCAAGTTCTGATCGTGGTGGTCAAGTGTGGTGTCTGAGTTACTGTGAATGCTTTGCTTCTGGATTGTACTGTATTGAGCCATGCTCATGTCAAGAATGCTTTAACAAACCTGTTCATCAAGAAACTGTTCTTGCAACTCGTAAATTGATCAAGTCCCGAAATCCGCTAGCCTTTGCTCCTAGAGTGATTTGGAGCTCTGATCATTCAGCTGAACTTGGGGACGTTCCTCTTAAAACCCCAGCTTCATCAAGACATAAAACAGGATGCAATTGCAAGAAATCAAGTTGCTTGAAGAAATATTGCGAATGCTTTCAGGGCGGGGTCGGATGCTCGAGTAGCTGCAGATGTGAAGGGTGTAAAAATGTATTTGGTAAAAAAGATGGAATTGAAACTTATCGAGAAGAAACAAAATCATTCCGAAAGAATTTGTCAGGTAAATCTTTAACATGTACTGAGATTCAGAACAATGGAGAACAAAATTTAGGCTCTGCACTTCCAATAACAACCCCGTTGCTACCATGCAGGCCATTCACATTACAACATCAAACATCCTGCTCTTCTTTCATTAATGTGGGAGCACCTTCTGCTTTGTGTGCTGAAGGAAAACTCGAAAAGCCAAATATTCTCAGATGTCAACGCAAATTTGAGAAGGACGAAAAACTGGTTTTGGAAGGTAACATACCAGTTTACAGGGATTGTTCCTCAAGAACCGGCTTCAGGACTGCTTCTCCAAACAGAAATGGATTCGCCGTCGTAGTGGCGGATACATCGGCGGTTCATAGCATTTTGGTCCACAAATCTAACGAGGACAAGGTCATGGTTCTCGACGCTCACAAGCTGTTCGCTGCTAGTGGCGAGCCAGGAGATAGGGTTCAGTTCACTGAGTATATACAGAAAAACGTGGCGTTGTATCAGTTTCGTAATGGGATTCCCTTGACTACCGCAGCTGCAGCGAACTTCACCCGAGGCGAGCTCGCCACTGCCTTGAGGAAGAATCCGTACTCTGTGAACATCCTGTTGGCTGGTTATGACAAAGAAACAGGTCCTTCCCTCTATTACATCGATTATATTGCTACACTCCACGAAGTCGAAAAGGGTGCATTTGGTTACGGATCGTACTTTTCACTTTCAATGATGGACAGACATTACCATCCTAACATGTCACTAGAAGAGGCAATCGATTTGGTGGATAAGTGCATCATGGAAATCCGTTCTCGGCTTGTCGTGGCCCCGCCAAACTTTGTGATCAAGATTGTCGACAAGGACGGAGCAAGGGAGCTTGCTTGGCGTGAATCAATCAAGGATGCTAGTGTCCCTTCAACCTGA 2832 42.13 MDGPDRTQLGAASVSKIENSPVFNYINSLSPIKPLKAIHTNHAFNSPSLRAVTSVFSSPHANSARESSLLQGHSYAGRSKLISPPNGNKFHKNPCVYASVDELNGNSAVVHGHFNTRVSTINASDETPSRYLKSTIDVSKMTAYTCGSPGYSPSSNHFGILSDCKSESGGTSCLLVPYVQEDSKKGSYEREKNLVCPIEQRKEGTRHGLESLIYDTGNPLIFTSPDSSESMTLIQDSLDLKTNFSRGLMSQLASNGQNYMHELPCVDHWPDHSSLLKDTNELNKIVPTLYNYAYSNRGMHITAEEEIYNELGGLTTPASSLHNATWRRGLDFKMPGDCRKGTEDGKNSFSSILSQSDEKFIANNKQVVRPMSSGHLSLCILPGIGLHLNALAKNLKDCKNASEDSGRQSTLPCTTGLSHISSTSHEPLFTSADSEREMDPADNRIKMEEDAPQASHNVLNEDRLRLDLAGEHETCKRCNCKKSKCLKLFPIELVTHPNDPSIPSSDRGGQVWCLSYCECFASGLYCIEPCSCQECFNKPVHQETVLATRKLIKSRNPLAFAPRVIWSSDHSAELGDVPLKTPASSRHKTGCNCKKSSCLKKYCECFQGGVGCSSSCRCEGCKNVFGKKDGIETYREETKSFRKNLSGKSLTCTEIQNNGEQNLGSALPITTPLLPCRPFTLQHQTSCSSFINVGAPSALCAEGKLEKPNILRCQRKFEKDEKLVLEGNIPVYRDCSSRTGFRTASPNRNGFAVVVADTSAVHSILVHKSNEDKVMVLDAHKLFAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHEVEKGAFGYGSYFSLSMMDRHYHPNMSLEEAIDLVDKCIMEIRSRLVVAPPNFVIKIVDKDGARELAWRESIKDASVPST 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19105306 19115949 - BLOR04354 Blo12g00335 67596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00335 943 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 489 - -
Blo12g00335 943 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 516 749 - -
Blo12g00335 943 Pfam Proteasome subunit 749 921 IPR001353 GO:0005839|GO:0051603
Blo12g00335 943 ProSiteProfiles Proteasome beta-type subunit profile. 740 921 IPR023333 -
Blo12g00335 943 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 749 930 IPR029055 -
Blo12g00335 943 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 747 931 IPR029055 -
Blo12g00335 943 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 515 538 IPR005172 -
Blo12g00335 943 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 589 623 IPR005172 -
Blo12g00335 943 ProSiteProfiles CRC domain profile. 474 626 IPR005172 -
Blo12g00335 943 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 489 IPR044522 GO:0003700
Blo12g00335 943 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 516 749 IPR044522 GO:0003700
Blo12g00335 943 SMART CXC_2 586 627 IPR033467 -
Blo12g00335 943 SMART CXC_2 473 541 IPR033467 -
Blo12g00335 943 CDD proteasome_beta_type_2 749 931 IPR035206 GO:0010498
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00335 - - - qsu:112021049 570.852
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00527 Blo12g00335 CCT
Blo07g00229 Blo12g00335 CCT
Blo02g00527 Blo12g00335 ECH
Blo07g00229 Blo12g00335 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00527 Blo-Chr2:8671327 Blo12g00335 Blo-Chr12:19105306 5.90E-156 dispersed
Blo12g00335 Blo-Chr12:19105306 Blo16g01025 Blo-Chr16:38605507 2.54E-24 dispersed
Blo01g00120 Blo-Chr1:1646987 Blo12g00335 Blo-Chr12:19105306 8.68E-133 wgd
Blo12g00335 Blo-Chr12:19105306 Blo07g00229 Blo-Chr7:2846780 7.10E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019329 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12989 PF00227 Proteasome 3.00E-37 CL0052 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00335 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.104298 0.0 0.0 0.0 0.0 0.0