Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00358 ATGCTCAAGCGGAATGGTGGTCTGTCGCAGACTCACCCGCAACCACAGGCAGAAACGACAGACTCTACCCGTGAACGCTATCGGCTTGCAACTAACCTCGTTGATCAATTTCACCGGATTGAACTCGCCACGGTGCAAGATGGAGCACTCGCGGTGGAAGGAGCAACCGCCACGGTGCAAGATGGAGCATCCGCGACGAAAGCAGCACCTGCCGAGGTGCAAGTTGGAGCATCCGTGGAGGGTGAAGATAGAGGAGCCGCGACGGGCCATGTTGGTGGAATTGAAGCTGAAGCCGAGGTTAAAGCACAACATCAACCTCAACTGCAGTCTCAACAACGACCAACAGGAGTGCTTAGATTGTTGCACCGTGATCCCGAGATTGACACGTACAAGAAGCCAAAGTCCAATCAGCTGAATGTCATAGCCCGAGTGATCCACATCATCATGACGCACACTATTTTGCCTCGAGATGGACATCAAGACCATATTATCTGCATGGATCTCTATTTGCTCAAGAAGGTGTTCACCAAGAAAAAAGTAGACATCCGATATGTCATTTTGAGTTACATGCACGAGGTGCTGAACAACCCGGCCAAGAGTCTGCCATTCAATTGGCTCATTCAGAGGATTGTTAAGCAGTTTGGGGTACCAATCTCGAAGGATGAGCCAAGAATCGAAGAGAAGGCCACAGACGTCCACAATAGATTGAAAGTGGACCAAGTGGGGGTCAGCAAAGTTAGAGGGGAATGGGTATGTAAGACCCCGAAGAGGCGGTTGATCATTGATCAACTGAGTGTGAGTGGAAAGATTGAGTTGCAGAATATTTCAATAGCGCATGGTTTGATTGGCAATGAAGGATGGGTTGATCACAAGATCAACCGAGTGCAAACATTCCTGAAACTGGAACTACCAAGCGCGGTAGAATCCGAGGAGGTAGATGCCATCTTCATCAAGGGGACCTGGTTAGAATCTCGCTTTCATCTCTCCCTAACTGATGGCCTCCATGCTTGGATCTGCGATGCTTCGGAGGAGGAGGTGAGGGAACGTGCTGAGCAGTGGGATCAAGAGGTCTCAGTTTACATAGACATGGCGGAGCGGTATTTAGGGTTGCTGCAGCCTGAATCGACCTATGGGTTTACTGATGCTGGAAATGGATATAAAAGGCTCTCGTGGACATTTGAGAAGGAAGGGACCAAGCTAGAATGGCGATGGAGATGTAAGCCATCACCTAATAATAAGAAAATCACGTCAGGAATGTTGGACTTCCTCGTAGCTGGGAACACAAGGCTGAGCGAGGAAGTTGTTAGAAAAAATCTATCATTTGAGAGATTGAAAGTAGAAGCTGAGAAATGCTTAGCCCAAAGTGAGAGAATTAGCAGTGAGAAAATGGAGTTTGAGTCTGCAATTTACACAAAGTTTCTTGGTGTCTTGAATTCGAAGAAAGCAAAACTCAGACAGCTTCGAGATCAGCTCTCTGAGCAGAAAATTACTGGGAAATCATCAGAAGCAGAGGATTACTCCACAGAGAAAACTGAAAGTTTTAAAGGTGAAAGTGATAACGAAAAGAGTGAAGAAGAGGCTTTGAAAGATGTCATTGACACAGCGGGTTCAACTAGTGTTTCAAAAGGTAAAACTCGTTCAACTAGTGTTGCAAAAGGCAAAACTCGAGGCCAAAAGAGAAAAATAACATAA 1692 46.63 MLKRNGGLSQTHPQPQAETTDSTRERYRLATNLVDQFHRIELATVQDGALAVEGATATVQDGASATKAAPAEVQVGASVEGEDRGAATGHVGGIEAEAEVKAQHQPQLQSQQRPTGVLRLLHRDPEIDTYKKPKSNQLNVIARVIHIIMTHTILPRDGHQDHIICMDLYLLKKVFTKKKVDIRYVILSYMHEVLNNPAKSLPFNWLIQRIVKQFGVPISKDEPRIEEKATDVHNRLKVDQVGVSKVRGEWVCKTPKRRLIIDQLSVSGKIELQNISIAHGLIGNEGWVDHKINRVQTFLKLELPSAVESEEVDAIFIKGTWLESRFHLSLTDGLHAWICDASEEEVRERAEQWDQEVSVYIDMAERYLGLLQPESTYGFTDAGNGYKRLSWTFEKEGTKLEWRWRCKPSPNNKKITSGMLDFLVAGNTRLSEEVVRKNLSFERLKVEAEKCLAQSERISSEKMEFESAIYTKFLGVLNSKKAKLRQLRDQLSEQKITGKSSEAEDYSTEKTESFKGESDNEKSEEEALKDVIDTAGSTSVSKGKTRSTSVAKGKTRGQKRKIT 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19715371 19721409 - BLOR04377 Blo12g00358 67619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00358 563 Pfam DNA double-strand break repair and V(D)J recombination protein XRCC4 322 535 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Blo12g00358 563 Gene3D - 305 406 IPR038051 -
Blo12g00358 563 MobiDBLite consensus disorder prediction 1 25 - -
Blo12g00358 563 MobiDBLite consensus disorder prediction 498 531 - -
Blo12g00358 563 SUPERFAMILY XRCC4, C-terminal oligomerization domain 411 501 - -
Blo12g00358 563 MobiDBLite consensus disorder prediction 494 563 - -
Blo12g00358 563 PANTHER DNA REPAIR PROTEIN XRCC4 296 561 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Blo12g00358 563 Gene3D - 411 506 IPR014751 -
Blo12g00358 563 SUPERFAMILY XRCC4, N-terminal domain 320 401 IPR009089 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Blo12g00358 563 MobiDBLite consensus disorder prediction 534 552 - -
Blo12g00358 563 Coils Coil 474 497 - -
Blo12g00358 563 Pfam Putative plant transposon protein 131 217 IPR046796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00358 K10886 XRCC4; DNA-repair protein XRCC4 - cit:102621916 325.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01184 Blo-Chr1:43689554 Blo12g00358 Blo-Chr12:19715371 3.97E-12 dispersed
Blo01g01398 Blo-Chr1:52411281 Blo12g00358 Blo-Chr12:19715371 3.52E-36 dispersed
Blo04g01155 Blo-Chr4:19586043 Blo12g00358 Blo-Chr12:19715371 1.06E-55 dispersed
Blo12g00163 Blo-Chr12:10750071 Blo12g00358 Blo-Chr12:19715371 1.93E-52 dispersed
Blo12g00358 Blo-Chr12:19715371 Blo09g00144 Blo-Chr9:3885031 4.83E-66 dispersed
Blo13g00290 Blo-Chr13:14776243 Blo12g00358 Blo-Chr12:19715371 2.26E-16 dispersed
Blo16g00270 Blo-Chr16:6324543 Blo12g00358 Blo-Chr12:19715371 4.86E-34 dispersed
Blo12g00358 Blo-Chr12:19715371 Blo10g00368 Blo-Chr10:6050278 1.77E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g623 . Blo12g00358 Bda03g00849 . Bpe04g00803 . Bma04g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012329 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00358 Blo_Chr12 FPKM 2.609418 2.760125 3.803193 4.238464 4.250631 4.092039 3.858014 0.0 0.0 0.0