Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00376 ATGGCTTCCCTCTCCCTATCATTCTCTTCCTCTCTTCTTCCTTCACCTCTTCCTCTCGACTCCAGTTCCACCTCCCTCCCCCCTACCCTCCGCAGATCCCAACTCAGGTACTCATCCTTTGTCCAATGCGCATTCGCAGCTCCCCCCAGAAAATCCTCTTCTTCGCCGGACTATAAGAAAGGGCTTCGGCGAAAAGCAAGGAAAACTTCTTTTGAAAAAAAAGGCGAGTATCCATCCACTTCACCAGCAGCGGCGGCGAGAAACCCTTCTTCATCATCAACTTATGCTTCTTCATCGCCGGAAGCAACAAAGAGGCATTGGAAGAAAGGTGAGTATCCGGGAATTTCGGAAAATTGGTTACCCGGAACTTTGAAAAATTCACCCATCAAAAATGTCAAGAAAAGACTGGAGCGCAGAGAAAAAGCAAAGGCGTGGGTTACTACTGTCACAGAAGCTTTATCTGATAGTATTCTCAAGAAGCAGTGGCTTCAAGCTTTAGAGGTATTTGACATGCTTCGGGAGCAACCATTTTATCAACCAAAAGAAGGGACCTATATGAAGCTCCTTGTTCTTCTAGGAAGATCTGGGCAGCCACACCGAGCCCATCAGCTTTTTGACAAAATGATTGAAGAAGGATGTCCGCCTACTCCTGAACTTTACACAGCTTTACTAGCAGCTTATTGTCGGAACAATCTAATCGACAATGCATTTACAATTCTTAACCAAATGAAGGCTCTTCCTTCTTGCCAGCCTGATGTTTTCACATATAGTACTTTAATTAAGGCTTGTGTTGATGCTTCACAATTTGAATTACTTGAATCCTTGTATCAGGAGATGGATGAGCGATTAATAACTCCCAATACAGTGACCCAGAACATAGTTTTGAGTGGGTATGGTAAGGTGGGGAAATATGAGCAGATGGAGAAAGTCTTATCAGGAATGTTGGAGAGCTCGACTTGCAAACCGGATGTTTGGACAATGAATATCATTCTAGGTGTTTTTGGTAACAAGGGTCAGATAGATATTATGGAAAGATGGTATGAGAAATTTCGCAACTTCGGAATTGAGCCAGAAACACGCACCTTCAATATTTTAATCGGTGCGTATGGGAAGAAACGGATGTACGACAAAATGTCATCTGTGATGGAGTATATGAGGAAGCTTCAATTTCCTTGGACGACCTCAACTTACAATAACGTCATCGAAGCTTTTGCAGATGTTGGAGATGCAAAGAATATGGAGTATACGTTCGATCAGATGCGGACGGAGGGCATGAAAGCCGATACCAAAACATTCTGCTGCATAATCAATGGCTATGCCAATGCAGGTCTCTTCCACAAAGTAGTCAGCAGTGTTCAATTGGCCGGGAAGTTTGAGATACCGGAAAATACCTCGTTCTATAATGTGGTAATATCAGCATGTGCAAAGGCAGAGGATTTGATGGAGATGGATAGAGTATTTACACGAATGAAAGCCAATCAATGTCAGCCAAATAGCAAAACATACTCCATAATGATTGAGGCGTACAAAAAGGAAGGTATGAACGATAGGGTCTATGATTTGGAGCAGGAAATGAAGAACACAGTTGTTGACTTTCCTCAAGAGAGTAATGAGGCATAG 1620 43.02 MASLSLSFSSSLLPSPLPLDSSSTSLPPTLRRSQLRYSSFVQCAFAAPPRKSSSSPDYKKGLRRKARKTSFEKKGEYPSTSPAAAARNPSSSSTYASSSPEATKRHWKKGEYPGISENWLPGTLKNSPIKNVKKRLERREKAKAWVTTVTEALSDSILKKQWLQALEVFDMLREQPFYQPKEGTYMKLLVLLGRSGQPHRAHQLFDKMIEEGCPPTPELYTALLAAYCRNNLIDNAFTILNQMKALPSCQPDVFTYSTLIKACVDASQFELLESLYQEMDERLITPNTVTQNIVLSGYGKVGKYEQMEKVLSGMLESSTCKPDVWTMNIILGVFGNKGQIDIMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRTEGMKADTKTFCCIINGYANAGLFHKVVSSVQLAGKFEIPENTSFYNVVISACAKAEDLMEMDRVFTRMKANQCQPNSKTYSIMIEAYKKEGMNDRVYDLEQEMKNTVVDFPQESNEA 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20161122 20163570 + BLOR04395 Blo12g00376 67637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 361 389 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 289 324 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 219 253 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Blo12g00376 539 TIGRFAM PPR: pentatricopeptide repeat domain 467 498 IPR002885 -
Blo12g00376 539 MobiDBLite consensus disorder prediction 83 101 - -
Blo12g00376 539 Pfam Pentatricopeptide repeat domain 392 440 IPR002885 -
Blo12g00376 539 Pfam PPR repeat 184 213 IPR002885 -
Blo12g00376 539 Pfam PPR repeat 361 388 IPR002885 -
Blo12g00376 539 Gene3D Tetratricopeptide repeat domain 315 391 IPR011990 GO:0005515
Blo12g00376 539 Gene3D Tetratricopeptide repeat domain 248 314 IPR011990 GO:0005515
Blo12g00376 539 Gene3D Tetratricopeptide repeat domain 392 538 IPR011990 GO:0005515
Blo12g00376 539 PANTHER OS03G0309800 PROTEIN 52 530 - -
Blo12g00376 539 MobiDBLite consensus disorder prediction 1 28 - -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 322 IPR002885 -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 246 IPR002885 -
Blo12g00376 539 PANTHER ATPASE EXPRESSION PROTEIN 3 52 530 - -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Blo12g00376 539 Gene3D Tetratricopeptide repeat domain 125 247 IPR011990 GO:0005515
Blo12g00376 539 Pfam PPR repeat family 286 331 IPR002885 -
Blo12g00376 539 Pfam PPR repeat family 220 264 IPR002885 -
Blo12g00376 539 Pfam PPR repeat family 463 509 IPR002885 -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Blo12g00376 539 MobiDBLite consensus disorder prediction 46 107 - -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Blo12g00376 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00376 - - - pmum:103323280 746.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00590 Blo-Chr6:28635740 Blo12g00376 Blo-Chr12:20161122 1.71E-24 dispersed
Blo12g00376 Blo-Chr12:20161122 Blo17g00710 Blo-Chr17:20191155 2.82E-18 dispersed
Blo12g00376 Blo-Chr12:20161122 Blo16g01137 Blo-Chr16:39878314 1.38E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00376 Blo_Chr12 FPKM 1.497601 1.617928 4.54913 3.692263 3.203974 2.688798 3.258041 4.07125 4.063115 5.194533