Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00378 ATGATGCCAAAGGACGAGTTTTTGGACTATGAGTTACCTTCCGAAACCATGTTGTCTAGGCGTGTTGGGGACAACATTGCAAGCTCATCTGGAAGTAGTGCAAGATCATTTTTCATAGGGATGGGATTCCTACCTTCTTGTGTTGATATAGCAATAGAAGAAAATGGTGAAGACAATGTTGACTTGTTATTGGAGACTCTCATTACATATTCTGCTGTACCAAAACCAACCTCTGACTCATCAGATTCTGGAAAAGCCATTCCTTGCATGAACAGCAGCACTACACCTACACAACCTGCTGCAGTTCTTCAAAGATCAAATTCTGATTCTGCTGATTCTCTGGATAGCTTGTTTGATGACAAGGGTCCAGATGTTATGCAAGACTTTTCTATATATAATCTTCCAAAGGAGGAGCCTGATGAATTTGATGCTGTTGACTATGATAAAAGATCATCCTTACTCAGTATGAAATTCACAGTAGATGAGGTTGAGTTTGCAATTGATAAGCTTGGTGAAAATGCTCCTCTTAATGAATTGGTAGACTTCATCATTGCTGCACAAATAGCTGGAAAACTGGAGGAGGAAGATGATACAATTTACGTGTATGAAGAGAAAAAAGAGGATGTCAACAATGAAACCCTGTTCGGGACTATGGATAAAACTCTGCGGTTGCTAGAGATGGGTTTCACTGAAAATGATGTTTCTTTAGCAATTGAGAGGCTTGGTTCGGACATTGCAATTTCTGAGCTGGCCGCCTCTATTGTTGAAGGTCGAATTGCTGGTAACTTCTTTATCTCAAAGATATTTAGTGGAAGTAGCTCGAATTCTGTTAATGGATATGGTCCTTTTGGTACTACAGAAGTGAAAACTGAGGATTTTAGTTCGGATGCAGTTTATCAACAGGTTAACAAGGAGGAAACCATTGAAGGACAAAGACCAAAACAAGAATCTATGGATGACCGTTCCAATGGTGTTTTTCGTTTCGTTAAAAATCACGAGGATAGCATGCCGAAAGAAGAGTACATGGATGAAATTTCAGATTCTCTTTATCATTTTGGAGAAAACCAGAAGGGAAAAAGGCCAAAACTTGATCATGCAGTCAACAGAAGCTTTTTACCCAATCCCACATGGCAAGAAGAAAAATTTGAAGCTTCCGAATTGGGAATGCCCATACCCAGACCTCCCAAATCAAATCTGAGTAAGCGAGTGGATAAAATCATAGCTAAACCTCCATTTTTCTTCTATGGAAATACGCATAACATATCTAAGGATTCATGGGCGAAAATATCACAGTTCATGTATGGCCTGGAGCCAGAATTTGCGAATACTCAGTACTTCACAGCCTTGGATAGAAAGGAAGGGTACATCCACAATCTTTCAACCGAAAACAGATTTCATGTTCTTCCAAAATCTTCAATGAGCATTCAAGATGTAATACCACAGACGAAAAAATGGTGGCCTTCATGGGATATGAGAAAGCAGTTGGACTGCATCAACTCTGAAACAACTGGAATATCTCAGCTCTGTGATAAGCTTGGAAAGTTGCTAACTGATTGTCAGGAACACCCGTCGGCTGAACAACAAGGAAACATCCTCTGCCATTGTCGAACGTTGAATCTTGTCTGGACTGGAAAGAATAAGTTAAGTCCAATCGAGCCTCAACATTTGGAGAGTATACTCGGCTATCCAATTGATCACACTCAAGTTGGGGAGAGTGGCCTAATGGAAAGACTTCAGCTGCTGAAATACTCTTTTCAGACAGACACTTTAGGGTATTATCTTTCGGTATTGAAGTCAATTTTTCCAGAAGGATTGATGGTACTGTCAGTATTCAGCGGAATTGGCGGGGCGGTAGTTGCCTTGCACCGGCTTGGGATTCCTATGAAAGGGGTCGTCTCAGTGGAAACTTCACAAATGAAGAGGAGGATTCTTCAGAAGTGGTGGCATAAAACTGAACAGCCTGGGGAGTTGGTGCAGATGGAAGATATTCAAAAGTTAACAAGTAGCAAGATTGAGGGCTTGATAAAGAAATTTGGTGGGTTTGATTTGGTTATTTGTCAGAATTCTTGTTCCAACGAGACAAGCTCCAAACCTGTTGCGGGAGATGAAAGTGTGTCTGGTTTTGAGTTTTCGATATTTTACGAGTTTGTACGCGTAATGCAACGGGTGAGGAGCAGGATGGGAAGAAAGAAGTGA 2196 40.89 MMPKDEFLDYELPSETMLSRRVGDNIASSSGSSARSFFIGMGFLPSCVDIAIEENGEDNVDLLLETLITYSAVPKPTSDSSDSGKAIPCMNSSTTPTQPAAVLQRSNSDSADSLDSLFDDKGPDVMQDFSIYNLPKEEPDEFDAVDYDKRSSLLSMKFTVDEVEFAIDKLGENAPLNELVDFIIAAQIAGKLEEEDDTIYVYEEKKEDVNNETLFGTMDKTLRLLEMGFTENDVSLAIERLGSDIAISELAASIVEGRIAGNFFISKIFSGSSSNSVNGYGPFGTTEVKTEDFSSDAVYQQVNKEETIEGQRPKQESMDDRSNGVFRFVKNHEDSMPKEEYMDEISDSLYHFGENQKGKRPKLDHAVNRSFLPNPTWQEEKFEASELGMPIPRPPKSNLSKRVDKIIAKPPFFFYGNTHNISKDSWAKISQFMYGLEPEFANTQYFTALDRKEGYIHNLSTENRFHVLPKSSMSIQDVIPQTKKWWPSWDMRKQLDCINSETTGISQLCDKLGKLLTDCQEHPSAEQQGNILCHCRTLNLVWTGKNKLSPIEPQHLESILGYPIDHTQVGESGLMERLQLLKYSFQTDTLGYYLSVLKSIFPEGLMVLSVFSGIGGAVVALHRLGIPMKGVVSVETSQMKRRILQKWWHKTEQPGELVQMEDIQKLTSSKIEGLIKKFGGFDLVICQNSCSNETSSKPVAGDESVSGFEFSIFYEFVRVMQRVRSRMGRKK 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20196209 20202767 + BLOR04397 Blo12g00378 67639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00378 731 Coils Coil 192 212 - -
Blo12g00378 731 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 403 581 IPR029063 -
Blo12g00378 731 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 2 729 - -
Blo12g00378 731 Gene3D Vaccinia Virus protein VP39 599 731 IPR029063 -
Blo12g00378 731 MobiDBLite consensus disorder prediction 74 101 - -
Blo12g00378 731 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 399 730 IPR030380 GO:0006306
Blo12g00378 731 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 603 720 IPR029063 -
Blo12g00378 731 PANTHER INACTIVE DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM3-RELATED 2 729 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00378 - - - jre:109001172 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00378 Blo-Chr12:20196209 Blo17g00303 Blo-Chr17:3174352 5.71E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g226 . Blo12g00378 Bda03g00829 . Bpe04g00786 . Bma04g00728 . . . . . . . . . . . . . . . . . Cla06g00401 Cam06g0423 Cec06g0430 Cco06g0430 Clacu06g0409 Cmu06g0409 Cre06g1189 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01980 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006515 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00378 Blo_Chr12 FPKM 1.833335 1.423769 2.982073 1.629424 0.915148 1.995347 1.872173 6.954949 5.329298 5.576135