Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00385 ATGGCGTCTTTGACTCAGCAATTCACAGGACTGAGATTCGCATCTCCATTTTCGCCTCGATTAGCGAAGACTGTTACAAGGCCTACTAGCCACTGTAACAAGTCCAAGCTTTCTATTGTCTCCGCCGCACCTACTCCCATTTCGAACGCTCAAACCAAAGAGCGGCTTAAACTCAAGCAGCTCTTCGAGGAGGCCTTTGAACGCTGCCGTACTGCCCCCACCGAAGGAGTTTCTTTCACTCTCGAAGACTTCCATGCCGCTCTTGATAAGTACGACTTCGTCTCTGAAATTGGGATGAAGGTGTGA 306 49.67 MASLTQQFTGLRFASPFSPRLAKTVTRPTSHCNKSKLSIVSAAPTPISNAQTKERLKLKQLFEEAFERCRTAPTEGVSFTLEDFHAALDKYDFVSEIGMKV 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20428918 20429223 - BLOR04404 Blo12g00385 67646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00385 101 PANTHER 30S RIBOSOMAL PROTEIN S1 1 101 - -
Blo12g00385 101 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00385 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - jre:109018700 119.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00046 Blo-Chr1:610816 Blo12g00385 Blo-Chr12:20428918 1.47E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g164 . Blo12g00385 . . . Bpe14g01123 . . . . Cma06g01515 . . . . Cpe08g00173 . . . . . . . . . . . . . . . . . Cone7ag0135 Cone4ag0140 . . . . . . . Bda13g00193 . . . . . . . . . . . . . . . . . . . . Cla05g00666 Cam05g0730 Cec05g0737 Cco05g0737 Clacu05g0723 Cmu05g0688 Cre05g0762 . Csa03g01483 Chy06g00720 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033514 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00385 Blo_Chr12 FPKM 12.139922 14.455306 24.660549 20.226887 47.670826 54.067074 47.677975 14.81104 15.332236 13.464956