Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00390 ATGGAGGAAGCGGATCACGTAGCAACTTCCTCATCTTCTGCGGCTACGATCGACAGAATAGCCTCAGGCGATGCATCTTCTTCGAGTATTTTTCACGTTCGCGAAGAGGGAGATGACCGTTTGCAGCATATCCACGAAGTGCAGCATTCAGAATCTGAGGACGGACAGCTACGAATATCTTTTAGAGGAACCATATCAGCTTATGAAGAGGCGTCATCGTTGATCAGGGACGATTCTTGGTCTTGCGCCGTTGTTGTTCTTACTTTTTGGTTCTTTGTTATCTTTTCTCTTCGTCTGCTTCAGGAGTGGGCATATTTCCTCAATGAAGGGTCTCAAATAGATATTTCCTATACAGTACACTCTCTGAGCTCGTCTATTTTTCTCATAATTGCTGATGGAAATGATGGCCTCGCTCAGTGGCTTGAGAATCCAACGTATCCTAATACCACTTTATCCTGGAACGTCATTCATGGAAATGGTAATATCCAGCTGAAGATATATAAAGCTTCTAATTATTACGTTGCTCTCGGTAACTTAAATTCAGAGGAGGTTGAGGTTCAATTGAACTTAAGCGTAAGGGCTGTGCTCTACAACACAACAAATGCTTATTACAAGTGCACTTTTACCAGCGGCTCATGTGGTTTGAGTGTTATGTTTCCTGGTGGAAATTCAGCTCTCATAACTTCTCCTGATCCAGAACAGGCTGCCTTAAATGATGGGTGGGATGTCAAAATGTCTTATGGACCAAGGTGGGCCACGTATGTTCTTGGCACCGGTGGAATGACCATACTAATGTTAGTGGCCTTTAACTTTGTCAACAAGTTTCAATTTACTCGTGAAGACGAAACAGGAGGTCAGCACGCAGAGGCTGGATCTGAAAGGGCGCCACTTCTATCAGTTAAGGATGATGATCTCTCGAGTTGGGGATCTTCTTACGATTCTGCATCGCAAGATGAAGAAGATTTTGAACAATTACTGGCAGGGGGCTCGCTTGATGGGAAGGCAGTTAAAGATGGGGAGATTGCTAATAATACTCGCCGTCTTTGTGCAATTTGCTTTGATGCTCCTAGAGATTGCTTCTTCCTTCCATGTGGACACTGTGTAGCTTGTTTTGAATGCGGATCAAGCGAAGAGCTTCTATCGGACATGGAAATGGCTACGAGTCCACGCACCGTAGAGGAGATCTACAGAGATTATAGCGCCAGAAGAACTGGCGTTGTCCGGGCTTTGACTCATGATGTGAATGAATTCTATAGTCTCTGTGATCCAGACAAGGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCAGAAGAGGTTCCACCAGAGCTTCCAGAGCCAGTGCTTGGAATTAATTTTGCTAGAGATGGTATGAACCGCAAGGATTGGATTTCGTTAGTCGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTTGGTGCCCGTCTTAACCGGAATGAAAGGAAGCGTCTGTTTGGCTTGATCAATGATTTACCAACGGTCTTTGAAGTTGTGACTGAGAGGAAGCCTGTTAAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCCGAAGAAAATTACGAAGAAGATGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGAAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTCCATGGGAAGTGTGTAAAGATAACACCTGCAAAAGCCGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAGGGTAGACAATAA 1866 44.59 MEEADHVATSSSSAATIDRIASGDASSSSIFHVREEGDDRLQHIHEVQHSESEDGQLRISFRGTISAYEEASSLIRDDSWSCAVVVLTFWFFVIFSLRLLQEWAYFLNEGSQIDISYTVHSLSSSIFLIIADGNDGLAQWLENPTYPNTTLSWNVIHGNGNIQLKIYKASNYYVALGNLNSEEVEVQLNLSVRAVLYNTTNAYYKCTFTSGSCGLSVMFPGGNSALITSPDPEQAALNDGWDVKMSYGPRWATYVLGTGGMTILMLVAFNFVNKFQFTREDETGGQHAEAGSERAPLLSVKDDDLSSWGSSYDSASQDEEDFEQLLAGGSLDGKAVKDGEIANNTRRLCAICFDAPRDCFFLPCGHCVACFECGSSEELLSDMEMATSPRTVEEIYRDYSARRTGVVRALTHDVNEFYSLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDNPSVDSGSKSRSSTKRSNDGQVKSNPKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSLKKGRQ 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20605029 20612589 - BLOR04409 Blo12g00390 67651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00390 621 SUPERFAMILY FYVE/PHD zinc finger 555 618 IPR011011 -
Blo12g00390 621 Pfam Domain of unknown function (DUF4793) 162 267 IPR032010 -
Blo12g00390 621 PANTHER OS05G0521000 PROTEIN 1 97 IPR044586 GO:0004842
Blo12g00390 621 ProSitePatterns Zinc finger PHD-type signature. 568 614 IPR019786 -
Blo12g00390 621 Pfam Zinc finger, C3HC4 type (RING finger) 346 375 - -
Blo12g00390 621 PANTHER OS05G0521000 PROTEIN 101 375 IPR044586 GO:0004842
Blo12g00390 621 Pfam Domain of unknown function (DUF4792) 100 137 IPR032008 -
Blo12g00390 621 Pfam Alfin 391 516 IPR021998 GO:0006355|GO:0042393
Blo12g00390 621 ProSiteProfiles Zinc finger PHD-type profile. 565 617 IPR019787 -
Blo12g00390 621 MobiDBLite consensus disorder prediction 526 548 - -
Blo12g00390 621 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 1 97 - -
Blo12g00390 621 SMART PHD_3 567 615 IPR001965 -
Blo12g00390 621 CDD PHD_AL_plant 567 617 IPR044104 -
Blo12g00390 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 397 IPR013083 -
Blo12g00390 621 MobiDBLite consensus disorder prediction 521 558 - -
Blo12g00390 621 Pfam PHD-finger 568 615 IPR019787 -
Blo12g00390 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 615 IPR013083 -
Blo12g00390 621 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 101 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00390 - - - cit:102609983 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01058 Blo-Chr1:35572792 Blo12g00390 Blo-Chr12:20605029 3.14E-29 dispersed
Blo01g01060 Blo-Chr1:35696223 Blo12g00390 Blo-Chr12:20605029 9.96E-119 dispersed
Blo04g00232 Blo-Chr4:1814038 Blo12g00390 Blo-Chr12:20605029 1.91E-111 dispersed
Blo12g00390 Blo-Chr12:20605029 Blo17g00276 Blo-Chr17:2903439 5.03E-86 dispersed
Blo12g01023 Blo-Chr12:28150001 Blo12g00390 Blo-Chr12:20605029 7.03E-68 dispersed
Blo12g00390 Blo-Chr12:20605029 Blo13g01041 Blo-Chr13:32746434 1.69E-103 wgd
Blo12g00390 Blo-Chr12:20605029 Blo13g00799 Blo-Chr13:30718106 5.72E-130 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00275 BCT 1 250 Alfin-like Transcription Factor Family AT1G14510 83.6 9.1e-111 396.7
Blo02g01188 BCT 1 284 Alfin-like Transcription Factor Family AT1G14510 74.6 2.9e-109 391.7
Blo17g00276 CCT,ECH 1 246 Alfin-like Transcription Factor Family AT1G14510 67.1 8.5e-93 337.0
Blo13g00799 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.8e-79 292.7
Blo12g00390 . 389 618 Alfin-like Transcription Factor Family AT1G14510 60.8 5.9e-78 287.7
Blo04g00232 CCT,ECH 8 229 Alfin-like Transcription Factor Family AT1G14510 60.2 1.3e-77 286.6
Blo16g00972 . 119 325 Alfin-like Transcription Factor Family AT1G14510 72.1 5.5e-76 281.2
Blo01g01452 BCT,CCT,ECH 356 615 Alfin-like Transcription Factor Family AT1G14510 53.4 3.4e-73 271.9
Blo01g00565 . 3 211 Alfin-like Transcription Factor Family AT1G14510 71.3 6.3e-72 267.7
Blo12g01023 BCT,CCT,ECH 15 230 Alfin-like Transcription Factor Family AT1G14510 50.6 4.7e-67 251.5
Blo01g01060 . 5 225 Alfin-like Transcription Factor Family AT1G14510 53.7 3.7e-64 241.9
Blo14g00563 BCT 317 454 Alfin-like Transcription Factor Family AT1G14510 64.0 8.6e-45 177.6
Blo17g00276 CCT,ECH 1 249 Alfin-like Transcription Factor Family AT5G26210 70.6 6.4e-104 374.0
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G26210 74.4 1.0e-93 340.1
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT5G26210 65.8 8.3e-88 320.5
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G26210 84.8 3.5e-86 315.1
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G26210 74.4 1.9e-84 309.3
Blo12g00390 . 386 620 Alfin-like Transcription Factor Family AT5G26210 59.8 4.0e-82 301.6
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT5G26210 57.5 3.4e-81 298.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT5G26210 54.1 1.1e-79 293.5
Blo04g00232 CCT,ECH 7 236 Alfin-like Transcription Factor Family AT5G26210 56.0 1.1e-76 283.5
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT5G26210 55.0 9.0e-74 273.9
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G26210 53.4 1.3e-67 253.4
Blo14g00563 BCT 317 432 Alfin-like Transcription Factor Family AT5G26210 75.9 1.3e-48 190.3
Blo17g00276 CCT,ECH 3 248 Alfin-like Transcription Factor Family AT3G42790 66.9 1.7e-93 339.3
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT3G42790 71.7 7.1e-92 334.0
Blo02g01188 BCT 9 284 Alfin-like Transcription Factor Family AT3G42790 63.8 2.6e-86 315.5
Blo13g00799 CCT,ECH 7 240 Alfin-like Transcription Factor Family AT3G42790 58.1 6.3e-80 294.3
Blo12g00390 . 388 620 Alfin-like Transcription Factor Family AT3G42790 58.1 2.4e-79 292.4
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT3G42790 71.8 3.8e-77 285.0
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G42790 79.1 8.5e-77 283.9
Blo04g00232 CCT,ECH 7 229 Alfin-like Transcription Factor Family AT3G42790 57.7 1.1e-76 283.5
Blo01g01452 BCT,CCT,ECH 346 617 Alfin-like Transcription Factor Family AT3G42790 52.5 9.4e-76 280.4
Blo12g01023 BCT,CCT,ECH 20 234 Alfin-like Transcription Factor Family AT3G42790 54.2 5.3e-71 264.6
Blo01g01060 . 4 225 Alfin-like Transcription Factor Family AT3G42790 53.1 7.4e-65 244.2
Blo14g00563 BCT 317 424 Alfin-like Transcription Factor Family AT3G42790 73.1 8.0e-43 171.0
Blo13g00799 CCT,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 78.4 4.6e-112 401.0
Blo12g00390 . 386 621 Alfin-like Transcription Factor Family AT5G05610 75.5 3.4e-107 384.8
Blo04g00232 CCT,ECH 1 229 Alfin-like Transcription Factor Family AT5G05610 74.5 4.8e-101 364.4
Blo01g01060 . 2 225 Alfin-like Transcription Factor Family AT5G05610 69.3 1.4e-89 326.2
Blo17g00276 CCT,ECH 8 248 Alfin-like Transcription Factor Family AT5G05610 64.5 4.6e-88 321.2
Blo03g00275 BCT 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 1.2e-83 306.6
Blo02g01188 BCT 9 281 Alfin-like Transcription Factor Family AT5G05610 57.1 5.1e-79 291.2
Blo16g00972 . 119 327 Alfin-like Transcription Factor Family AT5G05610 61.4 1.6e-72 269.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT5G05610 59.4 2.6e-67 252.3
Blo12g01023 BCT,CCT,ECH 20 229 Alfin-like Transcription Factor Family AT5G05610 50.2 4.8e-61 231.5
Blo14g00563 BCT 317 462 Alfin-like Transcription Factor Family AT5G05610 59.2 2.1e-40 162.9
Blo13g00799 CCT,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 81.6 4.9e-95 344.4
Blo12g00390 . 424 621 Alfin-like Transcription Factor Family AT3G11200 78.2 1.8e-89 325.9
Blo04g00232 CCT,ECH 43 229 Alfin-like Transcription Factor Family AT3G11200 75.9 2.1e-85 312.4
Blo01g01060 . 40 225 Alfin-like Transcription Factor Family AT3G11200 70.7 4.8e-74 274.6
Blo16g00972 . 117 327 Alfin-like Transcription Factor Family AT3G11200 62.0 5.9e-72 267.7
Blo17g00276 CCT,ECH 44 248 Alfin-like Transcription Factor Family AT3G11200 61.7 3.8e-71 265.0
Blo02g01188 BCT 72 277 Alfin-like Transcription Factor Family AT3G11200 65.5 1.2e-69 260.0
Blo03g00275 BCT 44 252 Alfin-like Transcription Factor Family AT3G11200 64.1 1.6e-69 259.6
Blo01g00565 . 3 213 Alfin-like Transcription Factor Family AT3G11200 60.8 2.0e-67 252.7
Blo01g01452 BCT,CCT,ECH 416 618 Alfin-like Transcription Factor Family AT3G11200 52.7 2.8e-58 222.2
Blo12g01023 BCT,CCT,ECH 52 229 Alfin-like Transcription Factor Family AT3G11200 50.5 1.5e-51 199.9
Blo14g00563 BCT 319 469 Alfin-like Transcription Factor Family AT3G11200 59.6 9.8e-43 170.6
Blo03g00275 BCT 1 160 Alfin-like Transcription Factor Family AT2G02470 85.6 5.6e-76 281.2
Blo02g01188 BCT 1 192 Alfin-like Transcription Factor Family AT2G02470 71.4 8.4e-72 267.3
Blo17g00276 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 2.1e-62 236.1
Blo13g00799 CCT,ECH 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 3.5e-54 208.8
Blo12g00390 . 389 536 Alfin-like Transcription Factor Family AT2G02470 66.9 2.3e-53 206.1
Blo04g00232 CCT,ECH 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 8.7e-53 204.1
Blo01g01060 . 5 171 Alfin-like Transcription Factor Family AT2G02470 58.6 3.3e-52 202.2
Blo01g01452 BCT,CCT,ECH 356 527 Alfin-like Transcription Factor Family AT2G02470 57.4 3.8e-48 188.7
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT2G02470 79.1 1.4e-47 186.8
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT2G02470 73.6 5.5e-47 184.9
Blo12g01023 BCT,CCT,ECH 15 151 Alfin-like Transcription Factor Family AT2G02470 60.6 2.3e-45 179.5
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT2G02470 68.5 4.8e-43 171.8
Blo17g00276 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 1.3e-66 249.6
Blo03g00275 BCT 3 165 Alfin-like Transcription Factor Family AT5G20510 71.5 6.3e-64 240.7
Blo02g01188 BCT 3 196 Alfin-like Transcription Factor Family AT5G20510 61.7 5.0e-61 231.1
Blo13g00799 CCT,ECH 7 172 Alfin-like Transcription Factor Family AT5G20510 60.1 1.7e-53 206.1
Blo01g01060 . 4 156 Alfin-like Transcription Factor Family AT5G20510 62.3 6.5e-53 204.1
Blo12g00390 . 388 538 Alfin-like Transcription Factor Family AT5G20510 62.4 1.4e-52 203.0
Blo04g00232 CCT,ECH 7 136 Alfin-like Transcription Factor Family AT5G20510 69.7 1.9e-52 202.6
Blo16g00972 . 119 239 Alfin-like Transcription Factor Family AT5G20510 76.9 1.4e-50 196.4
Blo12g01023 BCT,CCT,ECH 20 162 Alfin-like Transcription Factor Family AT5G20510 62.2 3.9e-50 194.9
Blo01g00565 . 3 117 Alfin-like Transcription Factor Family AT5G20510 78.3 2.0e-49 192.6
Blo01g01452 BCT,CCT,ECH 346 536 Alfin-like Transcription Factor Family AT5G20510 53.1 7.4e-49 190.7
Blo14g00563 BCT 317 439 Alfin-like Transcription Factor Family AT5G20510 68.3 7.7e-46 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008117 1 2 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12993 PF12165 Alfin 1.50E-66 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00390 Blo_Chr12 FPKM 1.502832 1.301351 1.319667 1.162531 1.079676 1.399867 1.07337 4.337668 4.534727 5.222343