Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00390 ATGGAGGAAGCGGATCACGTAGCAACTTCCTCATCTTCTGCGGCTACGATCGACAGAATAGCCTCAGGCGATGCATCTTCTTCGAGTATTTTTCACGTTCGCGAAGAGGGAGATGACCGTTTGCAGCATATCCACGAAGTGCAGCATTCAGAATCTGAGGACGGACAGCTACGAATATCTTTTAGAGGAACCATATCAGCTTATGAAGAGGCGTCATCGTTGATCAGGGACGATTCTTGGTCTTGCGCCGTTGTTGTTCTTACTTTTTGGTTCTTTGTTATCTTTTCTCTTCGTCTGCTTCAGGAGTGGGCATATTTCCTCAATGAAGGGTCTCAAATAGATATTTCCTATACAGTACACTCTCTGAGCTCGTCTATTTTTCTCATAATTGCTGATGGAAATGATGGCCTCGCTCAGTGGCTTGAGAATCCAACGTATCCTAATACCACTTTATCCTGGAACGTCATTCATGGAAATGGTAATATCCAGCTGAAGATATATAAAGCTTCTAATTATTACGTTGCTCTCGGTAACTTAAATTCAGAGGAGGTTGAGGTTCAATTGAACTTAAGCGTAAGGGCTGTGCTCTACAACACAACAAATGCTTATTACAAGTGCACTTTTACCAGCGGCTCATGTGGTTTGAGTGTTATGTTTCCTGGTGGAAATTCAGCTCTCATAACTTCTCCTGATCCAGAACAGGCTGCCTTAAATGATGGGTGGGATGTCAAAATGTCTTATGGACCAAGGTGGGCCACGTATGTTCTTGGCACCGGTGGAATGACCATACTAATGTTAGTGGCCTTTAACTTTGTCAACAAGTTTCAATTTACTCGTGAAGACGAAACAGGAGGTCAGCACGCAGAGGCTGGATCTGAAAGGGCGCCACTTCTATCAGTTAAGGATGATGATCTCTCGAGTTGGGGATCTTCTTACGATTCTGCATCGCAAGATGAAGAAGATTTTGAACAATTACTGGCAGGGGGCTCGCTTGATGGGAAGGCAGTTAAAGATGGGGAGATTGCTAATAATACTCGCCGTCTTTGTGCAATTTGCTTTGATGCTCCTAGAGATTGCTTCTTCCTTCCATGTGGACACTGTGTAGCTTGTTTTGAATGCGGATCAAGCGAAGAGCTTCTATCGGACATGGAAATGGCTACGAGTCCACGCACCGTAGAGGAGATCTACAGAGATTATAGCGCCAGAAGAACTGGCGTTGTCCGGGCTTTGACTCATGATGTGAATGAATTCTATAGTCTCTGTGATCCAGACAAGGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCAGAAGAGGTTCCACCAGAGCTTCCAGAGCCAGTGCTTGGAATTAATTTTGCTAGAGATGGTATGAACCGCAAGGATTGGATTTCGTTAGTCGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTTGGTGCCCGTCTTAACCGGAATGAAAGGAAGCGTCTGTTTGGCTTGATCAATGATTTACCAACGGTCTTTGAAGTTGTGACTGAGAGGAAGCCTGTTAAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCCGAAGAAAATTACGAAGAAGATGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGAAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTCCATGGGAAGTGTGTAAAGATAACACCTGCAAAAGCCGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAGGGTAGACAATAA 1866 44.59 MEEADHVATSSSSAATIDRIASGDASSSSIFHVREEGDDRLQHIHEVQHSESEDGQLRISFRGTISAYEEASSLIRDDSWSCAVVVLTFWFFVIFSLRLLQEWAYFLNEGSQIDISYTVHSLSSSIFLIIADGNDGLAQWLENPTYPNTTLSWNVIHGNGNIQLKIYKASNYYVALGNLNSEEVEVQLNLSVRAVLYNTTNAYYKCTFTSGSCGLSVMFPGGNSALITSPDPEQAALNDGWDVKMSYGPRWATYVLGTGGMTILMLVAFNFVNKFQFTREDETGGQHAEAGSERAPLLSVKDDDLSSWGSSYDSASQDEEDFEQLLAGGSLDGKAVKDGEIANNTRRLCAICFDAPRDCFFLPCGHCVACFECGSSEELLSDMEMATSPRTVEEIYRDYSARRTGVVRALTHDVNEFYSLCDPDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFGLINDLPTVFEVVTERKPVKDNPSVDSGSKSRSSTKRSNDGQVKSNPKAAEENYEEDEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSLKKGRQ 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20605029 20612589 - BLOR04409 Blo12g00390 67651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00390 621 SUPERFAMILY FYVE/PHD zinc finger 555 618 IPR011011 -
Blo12g00390 621 Pfam Domain of unknown function (DUF4793) 162 267 IPR032010 -
Blo12g00390 621 PANTHER OS05G0521000 PROTEIN 1 97 IPR044586 GO:0004842
Blo12g00390 621 ProSitePatterns Zinc finger PHD-type signature. 568 614 IPR019786 -
Blo12g00390 621 Pfam Zinc finger, C3HC4 type (RING finger) 346 375 - -
Blo12g00390 621 PANTHER OS05G0521000 PROTEIN 101 375 IPR044586 GO:0004842
Blo12g00390 621 Pfam Domain of unknown function (DUF4792) 100 137 IPR032008 -
Blo12g00390 621 Pfam Alfin 391 516 IPR021998 GO:0006355|GO:0042393
Blo12g00390 621 ProSiteProfiles Zinc finger PHD-type profile. 565 617 IPR019787 -
Blo12g00390 621 MobiDBLite consensus disorder prediction 526 548 - -
Blo12g00390 621 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 1 97 - -
Blo12g00390 621 SMART PHD_3 567 615 IPR001965 -
Blo12g00390 621 CDD PHD_AL_plant 567 617 IPR044104 -
Blo12g00390 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 397 IPR013083 -
Blo12g00390 621 MobiDBLite consensus disorder prediction 521 558 - -
Blo12g00390 621 Pfam PHD-finger 568 615 IPR019787 -
Blo12g00390 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 615 IPR013083 -
Blo12g00390 621 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 101 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01058 Blo-Chr1:35572792 Blo12g00390 Blo-Chr12:20605029 3.14E-29 dispersed
Blo01g01060 Blo-Chr1:35696223 Blo12g00390 Blo-Chr12:20605029 9.96E-119 dispersed
Blo04g00232 Blo-Chr4:1814038 Blo12g00390 Blo-Chr12:20605029 1.91E-111 dispersed
Blo12g00390 Blo-Chr12:20605029 Blo17g00276 Blo-Chr17:2903439 5.03E-86 dispersed
Blo12g01023 Blo-Chr12:28150001 Blo12g00390 Blo-Chr12:20605029 7.03E-68 dispersed
Blo12g00390 Blo-Chr12:20605029 Blo13g01041 Blo-Chr13:32746434 1.69E-103 wgd
Blo12g00390 Blo-Chr12:20605029 Blo13g00799 Blo-Chr13:30718106 5.72E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12993 PF12165 Alfin 1.50E-66 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00390 - - cit:102609983 435.261