Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00426 ATGGTTTTTTCACGATTAGAGAATTTAGATAAGCAATTTCAATCGTTGGCTGCTCGCCATGATGGATTGGAAACTACAGTTCACGGAATTGAGCAAGATATTGCTGTTAAGCATGAAACAGTTATGGCTGCTTTCGCACAACTGCTTCCTAATAGGTCAGATACGTCACCCGGTGTAGCAGCCACTGCAAATAATGTGTCATCTAATCCCTCAGATCGTCGCACTTCCTCACGAAGCTTCCCAGATCCCTCAGATGGTCGGTTCCTCCCGTTTGTGAATGTTATCGCAGCCAGTGGTAGGCGAGGACTAGGAATCGGAACCGAACCAGAATCGAGCTCGGTTCCTGTTCTGGGTCCGGTTCCTTGCGGTTCCGGTTCCGGTTCCGAGGCGGAGGTTCGTCATGGTCTGAGGAGGATTTGTTGTGCTGGAATAGCTTGGTCGGAGGAACGTTTCGCACGGGAAGAGAGTGTTTGGTTAGAGAGGGATTTTGTGGTCAGCAAAGGCAGAGACAGAGACTTGCCAAAAGTTGATGATTTCGCCCGATTTTGGAAGATGAACGGTGCTCAGAGTTTGATTGAGCTAACTCTAACGACAGAGATTCCCAAGTTATCCATCTCATTGTTTTGTCATTTTGAGCTTAGCCAGCTTTCATTCCTTTTCACACAATGGTTTGATATATTTGTTTTAATTGCAGGCCAAATAGTTTACAAGAAACTAAAGGAGAGGTCAGATCAGTTTATAGTTAGAGGTCTAGTGAGAACTGCAGAGAGCAAAGAGAAGCTCGGTGGAGCAGACGATCTCTTCGTCGGTGATATAAGGGATCCTAATACTCTTCTTCCTGTATTTCAAGGTATTGACTTTCTCATAATTCTCACTAGTGGTGTGCCGAGGATGAAGCCAGGGTTTGATCCAACCAAAGGAGGAAGGCCCGAGTTTTACTTTGAAGATGGAGCGTACCCCGAACAGATCGACTGGATTGGCCAGAAAAATCAGATAGATGTTGCTATTAGTGTAGGAGTACAGCACATTGTGTTGGTTGGGTCAATGGGTGGTACAAAACTTAACCATCCTTTGAACAGCTTGGGTAATGGAGATATACTGATCTGGAAAAGAAAGGCTGAGCAGTATCTGGCTGATTCTGGTGTGCCATACACTATAATAAGGGCTGGAGGGTTGCTGGATAGAGATGGTGGACTGAGAGAATTTGTAGTTGGGAAAGATGATGAGCTTCTGCAGCTTGAGACCAGAACTATCCCCAGAGCAGACGTTGCAGAGGTCTGCATTCAGGCGCTGCAGTTTGAGGAGGCGAGGAACAAGGCATTTGATCTGGCGTCAAAGCCTGAAGCAATTGGAACTCCTCCAACCAAGGATTTCAAGGCCTTCATCAGTCGGCTTCGGAGTTGCAGAAGCGTATTAGTAAGCATGGCGGTTGTTTCCTCCATCGTCGCCTGCAATTCTCTGAACTCCAGTTTAACTGGACCTATCAGTCTTCTTCATCGAAATGGCAACAGCACAACGTTTCCCCTTTCTGCCAAGAAAATCGCTCATCGTCGCCCATCGATTCTTAATGAATTAAGCTCCAACTCAAACCTTGGTTCAAACGGAGAGGAAGATAACGAAGTGGAGAATTTAGGGGTGAAAGCTGCGTTGTCGATGTTAATATTCTATAAAAGAGAAATCTCGCCGATTTTGCCTAATAGTTGTCGATATATACCAACTTGTAGTGAGTATTCAATGGAAGCTTACAAGAAATATGGAGTCGTCAAGGGCACTATATTGACCGCTTGGCGTCTCTGTCGCTGTAACCCCCTTGGCGGTGCTTGTGGGTATGGAAACCTGTACAGCCAAGGCTACGGAGTAAACACTGCGGCACTGAGCACTGCCCTGTTCAACAGCGGGCTCAGTTGCGGTGCCTGCTTCGAGATTAAGTGCGCGGACGACCCAAAGTGGTGTCACCCGGGTAACCCTTCCATCTTCATCACCGCCACCAATTTCTGCCCTCCAAACTTCGCTCTACCTAACGACAATGGCGGCTGGTGCAACCCTCCCCGTCCCCATTTCGACCTCGCCATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATAGTCCCTGTTTCTTTCCGCCGGGTGGCATGCAGAAAGCCGGGGGGAATCAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTCTCATCACAAACGTCGCGGGTGCAGGTGATGTCGTGCGCGTCAGCGTGAAGGGCGGAAACACTGGATGGATGAGCATGAGCCGGAACTGGGGCCAAAATTGGCAAACTAATTCCGCATTGGTGGGCCAAACTCTCTCGTTCAGAGTCACGGGCAGTGACGGACGCACCTCTACGTCATGGAACGTGGCGCCATCCAATTGGCAGTTTGGTCAGACTTTCAGCGGGAAGAATTTCCGCGTCTGA 2442 48.61 MVFSRLENLDKQFQSLAARHDGLETTVHGIEQDIAVKHETVMAAFAQLLPNRSDTSPGVAATANNVSSNPSDRRTSSRSFPDPSDGRFLPFVNVIAASGRRGLGIGTEPESSSVPVLGPVPCGSGSGSEAEVRHGLRRICCAGIAWSEERFAREESVWLERDFVVSKGRDRDLPKVDDFARFWKMNGAQSLIELTLTTEIPKLSISLFCHFELSQLSFLFTQWFDIFVLIAGQIVYKKLKERSDQFIVRGLVRTAESKEKLGGADDLFVGDIRDPNTLLPVFQGIDFLIILTSGVPRMKPGFDPTKGGRPEFYFEDGAYPEQIDWIGQKNQIDVAISVGVQHIVLVGSMGGTKLNHPLNSLGNGDILIWKRKAEQYLADSGVPYTIIRAGGLLDRDGGLREFVVGKDDELLQLETRTIPRADVAEVCIQALQFEEARNKAFDLASKPEAIGTPPTKDFKAFISRLRSCRSVLVSMAVVSSIVACNSLNSSLTGPISLLHRNGNSTTFPLSAKKIAHRRPSILNELSSNSNLGSNGEEDNEVENLGVKAALSMLIFYKREISPILPNSCRYIPTCSEYSMEAYKKYGVVKGTILTAWRLCRCNPLGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCADDPKWCHPGNPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVACRKPGGIRFTINGFRYFNLVLITNVAGAGDVVRVSVKGGNTGWMSMSRNWGQNWQTNSALVGQTLSFRVTGSDGRTSTSWNVAPSNWQFGQTFSGKNFRV 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21683742 21707940 + BLOR04445 Blo12g00426 67687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00426 813 MobiDBLite consensus disorder prediction 53 77 - -
Blo12g00426 813 SMART Haemolytic_2 545 613 IPR002696 -
Blo12g00426 813 Gene3D - 720 811 IPR036749 -
Blo12g00426 813 Pfam Lytic transglycolase 622 708 IPR009009 -
Blo12g00426 813 Gene3D - 577 715 IPR036908 -
Blo12g00426 813 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 232 445 IPR036291 -
Blo12g00426 813 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 605 719 IPR007112 -
Blo12g00426 813 SMART dpbb_1 622 709 IPR007112 -
Blo12g00426 813 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 729 808 IPR007117 -
Blo12g00426 813 PANTHER EXPANSIN 604 812 - -
Blo12g00426 813 SUPERFAMILY PHL pollen allergen 716 807 IPR036749 -
Blo12g00426 813 PRINTS Expansin/Lol pI family signature 756 770 IPR007118 GO:0005576
Blo12g00426 813 PRINTS Expansin/Lol pI family signature 604 622 IPR007118 GO:0005576
Blo12g00426 813 PRINTS Expansin/Lol pI family signature 702 718 IPR007118 GO:0005576
Blo12g00426 813 PRINTS Expansin/Lol pI family signature 794 808 IPR007118 GO:0005576
Blo12g00426 813 PRINTS Expansin/Lol pI family signature 626 644 IPR007118 GO:0005576
Blo12g00426 813 Gene3D - 230 468 - -
Blo12g00426 813 Pfam Expansin C-terminal domain 720 797 IPR007117 -
Blo12g00426 813 PANTHER EXPANSIN-A15 604 812 IPR002963 GO:0009664
Blo12g00426 813 Coils Coil 6 26 - -
Blo12g00426 813 MobiDBLite consensus disorder prediction 53 84 - -
Blo12g00426 813 Hamap Putative membrane protein insertion efficiency factor [yidD]. 546 613 IPR002696 -
Blo12g00426 813 PRINTS Expansin signature 794 810 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 677 694 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 694 707 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 718 730 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 617 631 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 644 655 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 658 668 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 765 786 IPR002963 GO:0009664
Blo12g00426 813 PRINTS Expansin signature 730 751 IPR002963 GO:0009664
Blo12g00426 813 SUPERFAMILY Barwin-like endoglucanases 602 737 IPR036908 -
Blo12g00426 813 CDD SDR_a5 228 443 - -
Blo12g00426 813 Pfam Putative membrane protein insertion efficiency factor 548 606 IPR002696 -
Blo12g00426 813 Pfam NAD(P)H-binding 232 432 IPR016040 -
Blo12g00426 813 TIGRFAM TIGR00278: putative membrane protein insertion efficiency factor 555 604 IPR002696 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00426 Blo-Chr12:21683742 Blo13g00832 Blo-Chr13:31013777 2.04E-110 dispersed
Blo01g01104 Blo-Chr1:39385949 Blo12g00426 Blo-Chr12:21683742 2.05E-139 transposed
Blo03g01387 Blo-Chr3:40313250 Blo12g00426 Blo-Chr12:21683742 8.73E-17 transposed
Blo04g00500 Blo-Chr4:4151146 Blo12g00426 Blo-Chr12:21683742 1.45E-10 transposed
Blo05g00045 Blo-Chr5:380693 Blo12g00426 Blo-Chr12:21683742 2.23E-06 transposed
Blo08g00591 Blo-Chr8:20638769 Blo12g00426 Blo-Chr12:21683742 6.30E-10 transposed
Blo10g00926 Blo-Chr10:28332523 Blo12g00426 Blo-Chr12:21683742 2.80E-09 transposed
Blo01g01112 Blo-Chr1:39657479 Blo12g00426 Blo-Chr12:21683742 2.67E-138 wgd
Blo12g00426 Blo-Chr12:21683742 Blo13g00884 Blo-Chr13:31385612 7.39E-132 wgd
Blo12g00426 Blo-Chr12:21683742 Blo13g01073 Blo-Chr13:32906708 3.41E-112 wgd
Blo12g00426 Blo-Chr12:21683742 Blo13g00766 Blo-Chr13:30398246 3.26E-134 wgd
Blo12g00426 Blo-Chr12:21683742 Blo14g00114 Blo-Chr14:820763 1.89E-133 wgd
Blo12g00426 Blo-Chr12:21683742 Blo07g01176 Blo-Chr7:31647090 7.63E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00426 - - csv:101212872 419.853