Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00441 ATGGGTAATGTCCATCGTCACCGTAAACACGGTAACAACTCGCTCTCCCAGCCCTTTAATTATGGCGAATCGGATGAAACAGCTCAGTCTCCCAGCTCATCTACCTGCAACTGCATCGGCAATATGGTAGCCTTGCCTTACACTCTCGCCGACTCCAGCTTGCGAGCCCTAGCCGGGCAGGCGGAAGGTTTTGGGCGGTTAGCCATCGGTGGTTTACACGGTCCTATTTATCATGTCACCACCTTAGCAGATGATGGGCCGGGATCTTTACGCAACGGATGCAGGAAGAAAGAACCGCTATGGATTGTCTTTGACATTTCAGGCACTATTAACCTCTCATCTTTCTTGAGTTTATCATCTTATAAGACCATCGATGGACGGGGCCAAAGGATAAAACTCACTGGGAAGGGTTTGAGGATTAAGGAATGTGAACATGTGATTATTTGCAATCTAGAGTTTGAAGGCGGGAAAGGTCCTGATGTCGATGCTATTCAAATTAAACCGAATTCTAAGCACATATGGATAGACCGTTGTGGCCTCCGTGGATATGCTGATGGACTGATTGATATAACCCGAGAAAGCACAGATGTTACTGTTTCTAGGTGTCACTTTTCACAGCATGACAAAACGATGCTGATTGGAGCTGATCCATCTCACGTTAGCGACCGATGTATAAGGGTGACGATTCATCATTGTTTCTTTGATGGGTGTCGCCAAAGGCATCCTCGCGTTAGATTTGCCCAAGTACACTTATACAACAATTACACGAGAAATTGGGGCATCTATGCTGTTTGTGCCAGTGTAGAATCTCAGGAATCTGAAAAGTTAAAAATATACTCTCAATGCAACATCTATGAAGCAGGACAAAAGAAGGCCGCAGACAAGGAGGAGGCAACAAGTGGCGTCATAAAGACGGAGGGCGACTTGTTTATTAGTGGGACTGATGCGGGTTTAATGAAAGAAAATCATGGCTGTTCTATCTTTCATCCAACTCAGTATTACTCTAAATGGACGGTGGAACGGCCGAGTGAAGCTCTGAAGCAGATTCTCCAACGGACTTCCGGGTGGCAAAATATTCCTCTGCCACCTGATCAATCAACTGGGCATACAAAATAG 1116 45.79 MGNVHRHRKHGNNSLSQPFNYGESDETAQSPSSSTCNCIGNMVALPYTLADSSLRALAGQAEGFGRLAIGGLHGPIYHVTTLADDGPGSLRNGCRKKEPLWIVFDISGTINLSSFLSLSSYKTIDGRGQRIKLTGKGLRIKECEHVIICNLEFEGGKGPDVDAIQIKPNSKHIWIDRCGLRGYADGLIDITRESTDVTVSRCHFSQHDKTMLIGADPSHVSDRCIRVTIHHCFFDGCRQRHPRVRFAQVHLYNNYTRNWGIYAVCASVESQESEKLKIYSQCNIYEAGQKKAADKEEATSGVIKTEGDLFISGTDAGLMKENHGCSIFHPTQYYSKWTVERPSEALKQILQRTSGWQNIPLPPDQSTGHTK 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21988055 21990733 - BLOR04460 Blo12g00441 67702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00441 371 Gene3D - 45 355 IPR012334 -
Blo12g00441 371 PANTHER PECTATE LYASE 18-RELATED 41 362 IPR045032 GO:0030570
Blo12g00441 371 MobiDBLite consensus disorder prediction 13 32 - -
Blo12g00441 371 SMART amb_all 72 291 IPR002022 -
Blo12g00441 371 MobiDBLite consensus disorder prediction 1 32 - -
Blo12g00441 371 PANTHER PECTATE LYASE 41 362 - -
Blo12g00441 371 SUPERFAMILY Pectin lyase-like 58 359 IPR011050 -
Blo12g00441 371 PRINTS Pollen allergen Amb family signature 240 259 IPR018082 -
Blo12g00441 371 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Blo12g00441 371 Pfam Pectate lyase 117 257 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00441 Blo-Chr12:21988055 Blo01g01002 Blo-Chr1:29378370 4.32E-44 dispersed
Blo12g00441 Blo-Chr12:21988055 Blo13g00897 Blo-Chr13:31509656 5.81E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00441 K01728 - qsu:112025472 572.778