Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00454 ATGAGCCTCAATGGTGATCATTATAAAGAATTTCAGGAACAGAATTTCATTCTGCAAGCTGAAGAAAAGGGGGTTAATTGTAAAGTTACTTGCGAGAAACAAAGACTACCTGAGAATGATAAGTTGAAAAGCAACACAATAGTGAATGATGTACAAGATAGGAAAGGAGAGACTGTTCAATTCTGGGATGTTATACCAGAACGGCGGCTGCAGCCTCAAGAATCAATGGTTTGTTGGGAGAGATTTCTACATCTCAGATCCCTCAAGGTTTTGCTTGTTGAAAATGATGATTCAACTCGTCATATAGTCAGTGCATTGCTTCGCAATTGCAGTTATGAAGTTATTGAGGCTGCAAATGGATTACAAGCATGGAAGATACTAGATGATCTGAGTAATCATATTGATCTTATCCTCACGGAGGTGGTAATGCCTTGCTTTTCTGGGATTGGATTATTATGCAAGATTATGAACCATAAAACAAGAAACAATATTCCTGTGATTATGATGTCATCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGCGCTGTTGATTTTTTAGTGAAGCCCGTAAGAAAGAATGAGCTTAAAATTCTTTGGCAGCATGTTTGGAGAAGATGCCACACTTCCAGCGGCAGCGGGAGTGAAAGTGGCATACAGGCTCAAAAGTCTGTGAAGTCAAAAAGCGTTAGAAATGTAGGACACAATATTGGCAGCAACGATCAAGAAGACAATGAGTCTAATTTGAATATTGAAGATGACAGTGGCAACGGGAGTGGCACTCAGCACGGAATTACCTCCGATATGATGGCGGGTCGCAAGGGAGACAACAAGGAAGGCTCAGCGGAAGACAGAGTTAGGTATGTTCACGAGGAGTTGCGAATTGAGATGGGAACACTTCGTGAGATGGGAACACTTCGTGAGGGAGTGTCCCAGGAGATGGGAGGCATGCGAGCAGACGTTTCAATGATTTTAGAGCAATTTGCGTCTCTGTTTGCGACATTGCAAAGGAGTGAAACTCCTCTAATGAAAGTGGTAGGGAAAAAGAAATCTTAG 1065 41.5 MSLNGDHYKEFQEQNFILQAEEKGVNCKVTCEKQRLPENDKLKSNTIVNDVQDRKGETVQFWDVIPERRLQPQESMVCWERFLHLRSLKVLLVENDDSTRHIVSALLRNCSYEVIEAANGLQAWKILDDLSNHIDLILTEVVMPCFSGIGLLCKIMNHKTRNNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPVRKNELKILWQHVWRRCHTSSGSGSESGIQAQKSVKSKSVRNVGHNIGSNDQEDNESNLNIEDDSGNGSGTQHGITSDMMAGRKGDNKEGSAEDRVRYVHEELRIEMGTLREMGTLREGVSQEMGGMRADVSMILEQFASLFATLQRSETPLMKVVGKKKS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22076112 22079023 - BLOR04473 Blo12g00454 67715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00454 354 SUPERFAMILY CheY-like 86 212 IPR011006 -
Blo12g00454 354 Pfam Response regulator receiver domain 90 200 IPR001789 GO:0000160
Blo12g00454 354 Gene3D - 87 256 - -
Blo12g00454 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 256 IPR045279 GO:0009736
Blo12g00454 354 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
Blo12g00454 354 CDD psREC_PRR 90 193 - -
Blo12g00454 354 MobiDBLite consensus disorder prediction 213 269 - -
Blo12g00454 354 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 34 256 - -
Blo12g00454 354 SMART REC_2 88 203 IPR001789 GO:0000160
Blo12g00454 354 MobiDBLite consensus disorder prediction 213 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00315 Blo-Chr7:3988006 Blo12g00454 Blo-Chr12:22076112 3.97E-47 dispersed
Blo12g00203 Blo-Chr12:13165601 Blo12g00454 Blo-Chr12:22076112 5.17E-43 dispersed
Blo12g00454 Blo-Chr12:22076112 Blo02g00706 Blo-Chr2:21852970 9.90E-24 dispersed
Blo12g00454 Blo-Chr12:22076112 Blo04g00089 Blo-Chr4:767243 7.29E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12998 PF00072 Response_reg 1.60E-20 CL0304 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00454 K12129 - zju:107432866 364.385