Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00456 ATGGCTGAAGCTCCGGCGAGCCCCGGTGGAGGGAGCTTCGAGAGCGGCGAACACAGCCCCCGTAATGTTCGCGAGCAGGACAGGTACCTTCCTATTGCGAATATTAGCCGAATCATGAAGAAAGCTCTCCCTGCTAATGGAAAGATCGCCAAGGATGCTAAGGAAACCGTCCAGGAATGTGTCTCGGAATTCATTAGCTTCATCACGAGCGAGGCAAGTGACAAGTGCCAAAGAGAGAAGAGGAAGACGATTAATGGTGACGATTTACTTTGGGCTATGGCAACTTTAGGGTTTGAAGATTATATTGATCCCCTTAAAATTTACCTTGGAAGATACAGAGAGGGTGATACAAAGGGGTCAGCAAAGGGTGGAGAAGGGTCGGCTAAAAAGGATGCTCAACCAGGTCCCAAAACTCAGGTTGTTCACCAAGGTTCTTTCTCGCAAGGATTTAATTATGGAAACTCTCAGGATATACGACCATTAAGCATCTGGAGATACTCGTGCCCAGCATCTGATTTTACCACCTATGCATGGGACAGAATAAAGATTTCAAGGACGAGGTCACCTCTTTCCGTTGGGGAGATCTTGTGCATTGAAATAGCAAATATTATGTCAAATGATTCCGTGGGAACATTGACAAATTAG 645 46.2 MAEAPASPGGGSFESGEHSPRNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLGRYREGDTKGSAKGGEGSAKKDAQPGPKTQVVHQGSFSQGFNYGNSQDIRPLSIWRYSCPASDFTTYAWDRIKISRTRSPLSVGEILCIEIANIMSNDSVGTLTN 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22128268 22130478 + BLOR04475 Blo12g00456 67717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00456 214 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Blo12g00456 214 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Blo12g00456 214 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Blo12g00456 214 MobiDBLite consensus disorder prediction 1 25 - -
Blo12g00456 214 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Blo12g00456 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Blo12g00456 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 155 - -
Blo12g00456 214 SUPERFAMILY Histone-fold 26 123 IPR009072 GO:0046982
Blo12g00456 214 MobiDBLite consensus disorder prediction 117 143 - -
Blo12g00456 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Blo12g00456 214 Gene3D Histone, subunit A 17 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00456 Blo-Chr12:22128268 Blo15g00440 Blo-Chr15:6493752 4.31E-58 dispersed
Blo12g00456 Blo-Chr12:22128268 Blo13g00735 Blo-Chr13:30178003 8.79E-81 wgd
Blo12g00456 Blo-Chr12:22128268 Blo04g00306 Blo-Chr4:2399021 1.01E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12999 PF00808 CBFD_NFYB_HMF 1.80E-27 CL0012 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00456 K08065 - cit:102624322 271.552