Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00487 ATGCTGGGTCGAACCTGCATTGTCCTGATTTCTCTTCTGATCTCTCTTTCCGAGCTTTCTGCAGCATTGTCCTTCAACCTCACTCTTCCGGGCTGTCATCCCAACCCAGATGAGGTTGTTCAAGAATTTCACAGGAAAGTAAATGCTTCCATCACGAGAAGGGAAACATTGCAAATCTCCAAAAACGTAGACTCTTCTTGCTTCACCGGAAACCCCATTGACGACTGCTGGAAATGCGATCCCAACTGGCCCAACGACCGCCAGAGGCTCGCCGATTGCTCCATCGGCTTCGGCCAGTACGCTCTCGGAGGCAAAAATGGCGAGTTTTACATCGTCACCGACGATTCAGACGATGACCCCGTGAATCCGAAGCCTGGAACGCTAAGATACGCAGTCATTCAGACGCAGCCTCTGTGGATCGTCTTCCCCGGTAACATGCTCATCAAGCTCTCTCAGGAACTCATCTTCAATAGCTTCAAAACCCTTGATGGTCGGGGAGCCAACGTTCACATTGTCGGCGGTGGGTGCATCACGTTGCAGTATATAAGCAATGTTATTATTCACAATATTCATATCCACCATTGCTATTCTTCTGGCAACACTATGGTCCGGTCGAGTCCAACGCATTTCGGATATAGAACTAAATCAGACGGTGATGGAATCTCCATCTTCGGATCGAAAGACATATGGATAGACCACTGTTCGCTATCGCACTGCAAGGACGGTTTGATCGACGCGGTGATGGGGTCCACCGCAATAACGATATCCAACAATTACTTTTCCCACCACGACGAGGTGATGCTGCTCGGCCACAGCGACAGCTACTTGCCGGACTCCGGCATGCAGGTGACGATCGCCTTCAATCACTTCGGCGAGAAGCTCGTTCAGCGAATGCCGCGGTGCCGGCGAGGCTACATTCACGTTGTCAACAACGACTTCACGCGGTGGGAAATGTACGCGATCGGCGGGAGCGGAAATCCCACGATCAACAGCCAGGGGAACCGATACACGGCTCCATACGATCGAAACGCGAAAGAGGTGACGAAGAGAGTGGAAACGGATGAGGCGGAGTGGAGGGGATGGAATTGGAGATCGGAGGGAGATATTTTGGTAAACGGAGCATATTTCGTTGCGTCCGGGGAAGAATTGGAGGTGAAATACGAGAAGGCATACAGCGTTGAGCCCAAGTCGGCGGCTCTAATCGATCTCCTAACCTACCACGCAGGGCCACTGGGTGTCGGCGGCCGGGGCAACAATTTAGGAATGTGGAGCACAGGACTCAACGGCGGAGGAGCTGGCTTACCAGGGTTCGATGGCCCAGATTACACGGACGACATGTCGGAAAGCAAACGAGTGTTAAGTCCAGCCCAACATCTCTCCTTATTTATCTTGAATCTAATGCTAGTAAGCTTCGTCCAC 1419 51.94 MLGRTCIVLISLLISLSELSAALSFNLTLPGCHPNPDEVVQEFHRKVNASITRRETLQISKNVDSSCFTGNPIDDCWKCDPNWPNDRQRLADCSIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQTQPLWIVFPGNMLIKLSQELIFNSFKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYSSGNTMVRSSPTHFGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTAITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETDEAEWRGWNWRSEGDILVNGAYFVASGEELEVKYEKAYSVEPKSAALIDLLTYHAGPLGVGGRGNNLGMWSTGLNGGGAGLPGFDGPDYTDDMSESKRVLSPAQHLSLFILNLMLVSFVH 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22639241 22641075 + BLOR04506 Blo12g00487 67748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00487 473 SUPERFAMILY Pectin lyase-like 59 396 IPR011050 -
Blo12g00487 473 SMART amb_all 145 342 IPR002022 -
Blo12g00487 473 Pfam Pectate lyase 156 334 IPR002022 -
Blo12g00487 473 PANTHER PECTATE LYASE 18-RELATED 1 431 IPR045032 GO:0030570
Blo12g00487 473 PANTHER PECTATE LYASE 12-RELATED 1 431 - -
Blo12g00487 473 Gene3D - 70 412 IPR012334 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Blo12g00487 473 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00057 Blo-Chr4:481433 Blo12g00487 Blo-Chr12:22639241 0 dispersed
Blo12g00487 Blo-Chr12:22639241 Blo12g00125 Blo-Chr12:8720829 0 dispersed
Blo13g00704 Blo-Chr13:29814282 Blo12g00487 Blo-Chr12:22639241 1.17E-165 dispersed
Blo12g00487 Blo-Chr12:22639241 Blo04g00340 Blo-Chr4:2674877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00487 K01728 - csv:101203012 778.474