Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00499 ATGCAATATTATTCACAGTCTACGGGTAATAGTAATTCAAGAGGGGGCGGCGGGGATGGAAGAAAAGCCGGCAGTGTTTCTGCTCTGGTTTTGGCCGTGCCGGATAGCGCGGGGCGTCATCCGATTTACCGCGGAGTCCGACGCCGGAGTACCGGAAAATGGGTGTCAGAAATTCGAGAGCCTAGAAAGCCTAATAGAATTTGGCTAGGTACATATTCGACGCCGGAAATGGCCGCGGTTGCTTACGACGTGGCGGCACTTGCGTTGAAAGGCGGAGACGCCGAACTTAATTTTCCAAACTCAGCGGCTTCTTTGCCAGTGCCAGTGTCATCCTGTCCCCGTGATATCCAAGCAGCTGCTTCTTCCGCCGCCGCTGCAATTGGAGCGGCTGCGGCCGCTATGGGGCTGACTAAAGTGGGTTATGAAAATAACGGGGAAAGAACCCAAAAAATGGAGGCTGAAAAACCGGCGAACAGTGAGTTTATTGACGAGGATTTAATCTTCGATATGCCAAATGTTATAATGAATATGGCGGAGGGGATGCTTCTTAGCCCTCCTCGCCTAAACCTTGCGAGTGATTACGCACCAGACGGTGAAGTAGTTGAAGAGCAAACTCTTTGGACATTCACTTGA 633 51.18 MQYYSQSTGNSNSRGGGGDGRKAGSVSALVLAVPDSAGRHPIYRGVRRRSTGKWVSEIREPRKPNRIWLGTYSTPEMAAVAYDVAALALKGGDAELNFPNSAASLPVPVSSCPRDIQAAASSAAAAIGAAAAAMGLTKVGYENNGERTQKMEAEKPANSEFIDEDLIFDMPNVIMNMAEGMLLSPPRLNLASDYAPDGEVVEEQTLWTFT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22835745 22836377 - BLOR04518 Blo12g00499 67760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00499 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 209 - -
Blo12g00499 210 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 MobiDBLite consensus disorder prediction 1 15 - -
Blo12g00499 210 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 29 209 - -
Blo12g00499 210 MobiDBLite consensus disorder prediction 1 22 - -
Blo12g00499 210 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Blo12g00499 210 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Blo12g00499 210 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo09g00514 Blo12g00499 CCT
Blo07g01353 Blo12g00499 CCT
Blo09g00514 Blo12g00499 ECH
Blo07g01353 Blo12g00499 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00430 Blo-Chr7:8484956 Blo12g00499 Blo-Chr12:22835745 2.92E-47 dispersed
Blo07g01353 Blo-Chr7:33666977 Blo12g00499 Blo-Chr12:22835745 1.46E-73 dispersed
Blo09g00092 Blo-Chr9:1744422 Blo12g00499 Blo-Chr12:22835745 2.84E-45 dispersed
Blo09g00093 Blo-Chr9:1750154 Blo12g00499 Blo-Chr12:22835745 4.03E-45 dispersed
Blo12g00499 Blo-Chr12:22835745 Blo15g00153 Blo-Chr15:1552776 3.67E-39 dispersed
Blo12g00499 Blo-Chr12:22835745 Blo09g00514 Blo-Chr9:16302623 1.14E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13007 PF00847 AP2 5.30E-12 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00499 - - jre:108985007 236.113