Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00527 ATGTACTGTGACAGTGGGAGTTTGTCTGATGCGCAGAAACTGTTCGATAAAATGTTTCCAAAGAATTTCACATCTTGGTTGTACATGATATCCGCTAACGCACATTGTGGATTTTTGGATGTAGCTCTAAATTTGTTTATTCAGATGCAAAATTCTGGATACACCCCCAACCGATCAATCTTTGTCAGCCTTTTGAGGTCACTTTCTGATCAATCTCATTTAGAGCTTGGGAAAATGATTCACTCCCATGTAATAAAAATCGGGTTCAGTTCCGATACAACAGTTGAGATGGAGATCCTAAACATGTACGTGAAGTGTCTATACATCGATGGCGCCGAGCTCGTTCTTAATCAGATGGTGGAAAAAAATACAGTGGCTTGCACCGGGTTGATGGTGGGGTATACTCAAGCTGATAAGCTGGAGAATGCACTTTCTGTGTTCGATCAAATGCAATTAAAGCGAAAGGGTGCATCAGATAACAGAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCAAAAGGACAAAGAGTGTATAACGTGTCTAAGGTTTCCAGGGGTGCTAGATCTGGGCCTCAAACACCTGTTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTCCAAAAAAGGAGAATATACGACATAACAAATGTCCTGGAAGGAGTAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGTTGGAAGAACGCATTGAGTCTAGTTACACACAATAGTTTTTATAGGTTTAAGTTTCGTTCTGTGATTGTCCTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGACCACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAACGAAACACTTATAGCTGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACGATGGGTCCCATTGATGTTTACCTTGTCAGTAAATTTGAGGAGAAATTTGAGGAGATGGAAGTGACTGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCAATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTAACTGAGCCAAATCCACGACAGACCAACCAAAGAAGCTTTGATTTCAATGACTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATTCGATAATGATGCGGATTACTGGCTTTTATCCGATGCTGAAGTTAGCATTACAGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTAGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCAACTACTGATGTCAACTTTCATCAAAGATGA 1677 40.55 MYCDSGSLSDAQKLFDKMFPKNFTSWLYMISANAHCGFLDVALNLFIQMQNSGYTPNRSIFVSLLRSLSDQSHLELGKMIHSHVIKIGFSSDTTVEMEILNMYVKCLYIDGAELVLNQMVEKNTVACTGLMVGYTQADKLENALSVFDQMQLKRKGASDNRGIQSNEWTRSPGCTKPINSPFQTPASSSKGQRVYNVSKVSRGARSGPQTPVSTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGVGLIEKKLKNRIRWKNALSLVTHNSFYRFKFRSVIVLQAEVGSLTIEERRLDHKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVTEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTEPNPRQTNQRSFDFNDSHDYSGVMKIVPSEFDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFRISDLGATMSQTPLPDIADAPTTDVNFHQR 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23213746 23219730 - BLOR04546 Blo12g00527 67788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00527 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Blo12g00527 558 MobiDBLite consensus disorder prediction 202 221 - -
Blo12g00527 558 Gene3D - 222 294 IPR036388 -
Blo12g00527 558 SMART E2F_TDP_2 228 293 IPR003316 GO:0005667|GO:0006355
Blo12g00527 558 CDD E2F_DD 311 414 IPR032198 GO:0046983
Blo12g00527 558 MobiDBLite consensus disorder prediction 157 221 - -
Blo12g00527 558 Pfam E2F/DP family winged-helix DNA-binding domain 230 292 IPR003316 GO:0005667|GO:0006355
Blo12g00527 558 Coils Coil 244 264 - -
Blo12g00527 558 PANTHER TRANSCRIPTION FACTOR E2F 141 548 IPR015633 GO:0000978|GO:0006357
Blo12g00527 558 Pfam E2F transcription factor CC-MB domain 314 414 IPR032198 GO:0046983
Blo12g00527 558 MobiDBLite consensus disorder prediction 158 196 - -
Blo12g00527 558 Pfam PPR repeat 25 53 IPR002885 -
Blo12g00527 558 Pfam PPR repeat 125 152 IPR002885 -
Blo12g00527 558 Gene3D - 309 415 - -
Blo12g00527 558 PANTHER TRANSCRIPTION FACTOR E2FB 141 548 - -
Blo12g00527 558 Coils Coil 325 345 - -
Blo12g00527 558 SUPERFAMILY Winged helix DNA-binding domain 228 291 IPR036390 -
Blo12g00527 558 Gene3D Tetratricopeptide repeat domain 1 209 IPR011990 GO:0005515
Blo12g00527 558 SUPERFAMILY E2F-DP heterodimerization region 313 415 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00527 K06620 E2F3; transcription factor E2F3 - zju:107432237 498.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00058 Blo-Chr8:472288 Blo12g00527 Blo-Chr12:23213746 7.64E-129 dispersed
Blo11g00852 Blo-Chr11:15208550 Blo12g00527 Blo-Chr12:23213746 1.38E-06 dispersed
Blo12g00527 Blo-Chr12:23213746 Blo13g00661 Blo-Chr13:29338213 1.17E-12 dispersed
Blo16g00208 Blo-Chr16:4669150 Blo12g00527 Blo-Chr12:23213746 6.75E-10 dispersed
Blo12g00527 Blo-Chr12:23213746 Blo14g00243 Blo-Chr14:2153627 1.50E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo07g00511 . 80 247 E2F-DP Transcription Factor Family AT5G02470 50.9 5.7e-40 161.8
Blo14g00243 BCT 10 458 E2F-DP Transcription Factor Family AT5G22220 55.6 1.6e-108 390.2
Blo08g00058 BCT 11 491 E2F-DP Transcription Factor Family AT5G22220 52.7 2.5e-106 382.9
Blo12g00527 . 227 520 E2F-DP Transcription Factor Family AT5G22220 58.8 4.0e-80 295.8
Blo14g00243 BCT 17 447 E2F-DP Transcription Factor Family AT2G36010 53.8 2.7e-119 426.0
Blo08g00058 BCT 22 478 E2F-DP Transcription Factor Family AT2G36010 50.6 1.5e-114 410.2
Blo04g00746 BCT 21 359 E2F-DP Transcription Factor Family AT3G01330 50.6 8.9e-80 294.3
Blo16g00208 . 3 377 E2F-DP Transcription Factor Family AT3G48160 54.6 1.4e-102 370.2
Blo04g00746 BCT 3 358 E2F-DP Transcription Factor Family AT3G48160 57.2 7.2e-94 341.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13013 PF16421 E2F_CC-MB 1.10E-31 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00527 Blo_Chr12 FPKM 2.087355 2.317707 2.033397 1.934842 14.396716 11.744898 11.275958 3.785366 4.097781 3.635354