Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00527 ATGTACTGTGACAGTGGGAGTTTGTCTGATGCGCAGAAACTGTTCGATAAAATGTTTCCAAAGAATTTCACATCTTGGTTGTACATGATATCCGCTAACGCACATTGTGGATTTTTGGATGTAGCTCTAAATTTGTTTATTCAGATGCAAAATTCTGGATACACCCCCAACCGATCAATCTTTGTCAGCCTTTTGAGGTCACTTTCTGATCAATCTCATTTAGAGCTTGGGAAAATGATTCACTCCCATGTAATAAAAATCGGGTTCAGTTCCGATACAACAGTTGAGATGGAGATCCTAAACATGTACGTGAAGTGTCTATACATCGATGGCGCCGAGCTCGTTCTTAATCAGATGGTGGAAAAAAATACAGTGGCTTGCACCGGGTTGATGGTGGGGTATACTCAAGCTGATAAGCTGGAGAATGCACTTTCTGTGTTCGATCAAATGCAATTAAAGCGAAAGGGTGCATCAGATAACAGAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCAAAAGGACAAAGAGTGTATAACGTGTCTAAGGTTTCCAGGGGTGCTAGATCTGGGCCTCAAACACCTGTTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTCCAAAAAAGGAGAATATACGACATAACAAATGTCCTGGAAGGAGTAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGTTGGAAGAACGCATTGAGTCTAGTTACACACAATAGTTTTTATAGGTTTAAGTTTCGTTCTGTGATTGTCCTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGACCACAAGACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAACGAAACACTTATAGCTGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACGATGGGTCCCATTGATGTTTACCTTGTCAGTAAATTTGAGGAGAAATTTGAGGAGATGGAAGTGACTGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCAATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTAACTGAGCCAAATCCACGACAGACCAACCAAAGAAGCTTTGATTTCAATGACTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATTCGATAATGATGCGGATTACTGGCTTTTATCCGATGCTGAAGTTAGCATTACAGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTAGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCAACTACTGATGTCAACTTTCATCAAAGATGA 1677 40.55 MYCDSGSLSDAQKLFDKMFPKNFTSWLYMISANAHCGFLDVALNLFIQMQNSGYTPNRSIFVSLLRSLSDQSHLELGKMIHSHVIKIGFSSDTTVEMEILNMYVKCLYIDGAELVLNQMVEKNTVACTGLMVGYTQADKLENALSVFDQMQLKRKGASDNRGIQSNEWTRSPGCTKPINSPFQTPASSSKGQRVYNVSKVSRGARSGPQTPVSTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGVGLIEKKLKNRIRWKNALSLVTHNSFYRFKFRSVIVLQAEVGSLTIEERRLDHKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVTEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTEPNPRQTNQRSFDFNDSHDYSGVMKIVPSEFDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFRISDLGATMSQTPLPDIADAPTTDVNFHQR 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23213746 23219730 - BLOR04546 Blo12g00527 67788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00527 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Blo12g00527 558 MobiDBLite consensus disorder prediction 202 221 - -
Blo12g00527 558 Gene3D - 222 294 IPR036388 -
Blo12g00527 558 SMART E2F_TDP_2 228 293 IPR003316 GO:0005667|GO:0006355
Blo12g00527 558 CDD E2F_DD 311 414 IPR032198 GO:0046983
Blo12g00527 558 MobiDBLite consensus disorder prediction 157 221 - -
Blo12g00527 558 Pfam E2F/DP family winged-helix DNA-binding domain 230 292 IPR003316 GO:0005667|GO:0006355
Blo12g00527 558 Coils Coil 244 264 - -
Blo12g00527 558 PANTHER TRANSCRIPTION FACTOR E2F 141 548 IPR015633 GO:0000978|GO:0006357
Blo12g00527 558 Pfam E2F transcription factor CC-MB domain 314 414 IPR032198 GO:0046983
Blo12g00527 558 MobiDBLite consensus disorder prediction 158 196 - -
Blo12g00527 558 Pfam PPR repeat 25 53 IPR002885 -
Blo12g00527 558 Pfam PPR repeat 125 152 IPR002885 -
Blo12g00527 558 Gene3D - 309 415 - -
Blo12g00527 558 PANTHER TRANSCRIPTION FACTOR E2FB 141 548 - -
Blo12g00527 558 Coils Coil 325 345 - -
Blo12g00527 558 SUPERFAMILY Winged helix DNA-binding domain 228 291 IPR036390 -
Blo12g00527 558 Gene3D Tetratricopeptide repeat domain 1 209 IPR011990 GO:0005515
Blo12g00527 558 SUPERFAMILY E2F-DP heterodimerization region 313 415 IPR037241 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00058 Blo-Chr8:472288 Blo12g00527 Blo-Chr12:23213746 7.64E-129 dispersed
Blo11g00852 Blo-Chr11:15208550 Blo12g00527 Blo-Chr12:23213746 1.38E-06 dispersed
Blo12g00527 Blo-Chr12:23213746 Blo13g00661 Blo-Chr13:29338213 1.17E-12 dispersed
Blo16g00208 Blo-Chr16:4669150 Blo12g00527 Blo-Chr12:23213746 6.75E-10 dispersed
Blo12g00527 Blo-Chr12:23213746 Blo14g00243 Blo-Chr14:2153627 1.50E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13013 PF16421 E2F_CC-MB 1.10E-31 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00527 K06620 - zju:107432237 498.819